(Q31043700)

23 September 2017

Which clustering algorithm is better for predicting protein complexes? (English)

1 reference

23 September 2017

1 reference

Georgios A. Pavlopoulos

object named as

Georgios A Pavlopoulos

2

0 references

Sophia Kossida

7

object named as

Sophia Kossida

1 reference

23 September 2017

Charalampos N Moschopoulos

1

1 reference

23 September 2017

Ernesto Iacucci

3

1 reference

23 September 2017

Jan Aerts

4

1 reference

23 September 2017

Spiridon Likothanassis

5

1 reference

23 September 2017

Reinhard Schneider

6

1 reference

23 September 2017

20 December 2011

1 reference

23 September 2017

1 reference

23 September 2017

4

1 reference

23 September 2017

549

1 reference

Creative Commons Attribution 2.0 Generic

23 September 2017

start time

1 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Computational approaches for detecting protein complexes from protein interaction networks: a survey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

A max-flow based approach to the identification of protein complexes using protein interaction and microarray data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

GIBA: a clustering tool for detecting protein complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

jClust: a clustering and visualization toolbox

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Human Protein Reference Database--2009 update

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

A structural approach for finding functional modules from large biological networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Growing functional modules from a seed protein via integration of protein interaction and gene expression data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Antibody-protein interactions: benchmark datasets and prediction tools evaluation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Semantic integration to identify overlapping functional modules in protein interaction networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Identification of functional modules using network topology and high-throughput data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Clustering by passing messages between data points

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Evaluation of clustering algorithms for protein-protein interaction networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Combining functional and topological properties to identify core modules in protein interaction networks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Spectral clustering of protein sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Proteome survey reveals modularity of the yeast cell machinery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

BioGRID: a general repository for interaction datasets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

MIPS: analysis and annotation of proteins from whole genomes in 2005.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Protein microarrays: applications and future challenges.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

The MIPS mammalian protein-protein interaction database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Glutathione-S-transferase-fusion based assays for studying protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

MIPS: analysis and annotation of proteins from whole genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Protein complexes and functional modules in molecular networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

An automated method for finding molecular complexes in large protein interaction networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Phage display: practicalities and prospects

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

An efficient algorithm for large-scale detection of protein families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Functional organization of the yeast proteome by systematic analysis of protein complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

A comprehensive two-hybrid analysis to explore the yeast protein interactome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

BIND--The Biomolecular Interaction Network Database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

DIP: the database of interacting proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

MINT: a Molecular INTeraction database

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

HPID: the Human Protein Interaction Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

The cell as a collection of protein machines: preparing the next generation of molecular biologists

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Complex discovery from weighted PPI networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Using indirect protein-protein interactions for protein complex prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Protein complex prediction via cost-based clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Global mapping of the yeast genetic interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Bootstrapping the interactome: unsupervised identification of protein complexes in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-0500-4-549

Discovering protein complexes in dense reliable neighborhoods of protein interaction networks.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

IntAct--open source resource for molecular interaction data

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

Interaction graph mining for protein complexes using local clique merging.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3267700

CFinder: locating cliques and overlapping modules in biological networks

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22185599

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-0500-4-549

1 reference

Dimensions Publication ID

23 September 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-0500-4-549

1 reference

23 September 2017

PubMed publication ID

22185599

1 reference