(Q31101081)

28 June 2017

Analyzing gene expression data in terms of gene sets: methodological issues (English)

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28 June 2017

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Jelle J Goeman

1

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Peter Bühlmann

object named as

Peter Bühlmann

series ordinal

2

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language of work or name

English

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publication date

15 February 2007

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28 June 2017

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28 June 2017

23

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28 June 2017

980-987

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28 June 2017

8

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FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

28 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Microarray data analysis: from disarray to consolidation and consensus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Significance analysis of functional categories in gene expression studies: a structured permutation approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Comparing functional annotation analyses with Catmap

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Higher criticism for detecting sparse heterogeneous mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

A global test for groups of genes: testing association with a clinical outcome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Testing association of a pathway with survival using gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Identifying biological themes within lists of genes with EASE

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Ontological analysis of gene expression data: current tools, limitations, and open problems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

ErmineJ: tool for functional analysis of gene expression data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Group testing for pathway analysis improves comparability of different microarray datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Theme discovery from gene lists for identification and viewing of multiple functional groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

Pathway level analysis of gene expression using singular value decomposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

GoMiner: a resource for biological interpretation of genomic and proteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM051

10.1093/BIOINFORMATICS/BTM051

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/GoemanB07

28 June 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

17303618