(Q31111556)

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FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Joaquín Dopazo

7

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

object named as

Eva Alloza

5

0 references

object named as

Pablo Minguez

2

0 references

object named as

Ignacio Medina

4

0 references

object named as

David Montaner

6

0 references

Fátima Al-Shahrour

1

object named as

Fátima Al-Shahrour

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Joaquín Tárraga

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

language of work or name

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publication date

3 May 2007

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

11 August 2017

35

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Europe PubMed Central

PMC publication ID

11 August 2017

Web Server issue

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

W91-6

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Next station in microarray data analysis: GEPAS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

PIANA: protein interactions and network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

cisRED: a database system for genome-scale computational discovery of regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Human protein reference database--2006 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The Universal Protein Resource (UniProt): an expanding universe of protein information

1 reference

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21 June 2018

miRBase: microRNA sequences, targets and gene nomenclature

1 reference

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21 June 2018

Towards a proteome-scale map of the human protein–protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

A human protein-protein interaction network: a resource for annotating the proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Text-mining and information-retrieval services for molecular biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Ontological analysis of gene expression data: current tools, limitations, and open problems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MicroRNA expression profiles classify human cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Array comparative genomic hybridization and its applications in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

InterPro, progress and status in 2005

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Systems biology in drug discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Network structures and algorithms in Bioconductor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MicroRNAs: genomics, biogenesis, mechanism, and function

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

MIPS: analysis and annotation of proteins from whole genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Identifying biological themes within lists of genes with EASE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

GEPAS: A web-based resource for microarray gene expression data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

GoMiner: a resource for biological interpretation of genomic and proteomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Global functional profiling of gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

BIND: the Biomolecular Interaction Network Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

TRANSFAC: an integrated system for gene expression regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933151

21 June 2018

The evolution of molecular biology into systems biology.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Profiling Gene Expression Using Onto-Express

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Functional Interpretation of Microarray Experiments

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM260

21 January 2018

Identifiers

10.1093/NAR/GKM260

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

DBLP publication ID

journals/nar/Al-ShahrourMTMAMD07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_se7p6t6ncnel3hxo4ws4yhlknu

1 reference

https://api.fatcat.wiki/v0/release/se7p6t6ncnel3hxo4ws4yhlknu

24 November 2022

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mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

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