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Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human [...]

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17533220%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17533220%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

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membrane protein

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based on heuristic

inferred from title

Anne Gonzalez de Peredo

2

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Europe PubMed Central

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31 December 2019

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31 December 2019

Odile Burlet-Schiltz

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Odile Burlet-Schiltz

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31 December 2019

Bernard Monsarrat

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Bernard Monsarrat

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31 December 2019

David Bouyssié

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David Bouyssié

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31 December 2019

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Emmanuelle Mouton

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31 December 2019

Renaud Albigot

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31 December 2019

Lucie Roussel

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31 December 2019

Nathalie Ortega

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31 December 2019

Jean-Philippe Girard

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31 December 2019

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28 May 2007

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31 December 2019

Molecular & Cellular Proteomics

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31 December 2019

6

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31 December 2019

9

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31 December 2019

1621-1637

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31 December 2019

Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Signal maps for mass spectrometry-based comparative proteomics.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Mass spectrometric-based approaches in quantitative proteomics

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Mass spectrometry-based quantitative proteomics.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Rapid identification of proteins by peptide-mass fingerprinting

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

A statistical model for identifying proteins by tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatio

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

OLAV: towards high-throughput tandem mass spectrometry data identification

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Proteomic characterization of the human centrosome by protein correlation profiling

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

STEM: a software tool for large-scale proteomic data analyses

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Plasticity of endothelial cells: rapid dedifferentiation of freshly isolated high endothelial venule endothelial cells outside the lymphoid tissue microenvironment

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

An optimized strategy for ICAT quantification of membrane proteins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Large-scale evaluation of quantitative reproducibility and proteome coverage using acid cleavable isotope coded affinity tag mass spectrometry for proteomic profiling.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

High endothelial venules (HEVs): specialized endothelium for lymphocyte migration

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Traffic signals for lymphocyte recirculation and leukocyte emigration: the multistep paradigm

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Primary structure of ICAM-1 demonstrates interaction between members of the immunoglobulin and integrin supergene families

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

VCAM-1 on activated endothelium interacts with the leukocyte integrin VLA-4 at a site distinct from the VLA-4/fibronectin binding site.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Endothelial leukocyte adhesion molecule 1: an inducible receptor for neutrophils related to complement regulatory proteins and lectins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Endothelial-leukocyte adhesion molecules

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Activated leukocyte cell adhesion molecule is a component of the endothelial junction involved in transendothelial monocyte migration.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Human guanylate binding protein-1 (hGBP-1) characterizes and establishes a non-angiogenic endothelial cell activation phenotype in inflammatory diseases

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Interferon-mediated protein kinase and low-molecular-weight inhibitor of protein synthesis

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

The human 2',5'-oligoadenylate synthetase family: interferon-induced proteins with unique enzymatic properties

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Phospholipid scramblase 1 potentiates the antiviral activity of interferon

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Identification of CD146 as a component of the endothelial junction involved in the control of cell-cell cohesion.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Proteomic mapping of brain plasma membrane proteins.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Culture of human endothelial cells derived from umbilical veins. Identification by morphologic and immunologic criteria

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

The gene expression profile of human umbilical vein endothelial cells stimulated by tumor necrosis factor alpha using DNA microarray analysis

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T600069-MCP200

21 January 2018

Identifiers

10.1074/MCP.T600069-MCP200

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17533220%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17533220%20AND%20SRC:MED&resulttype=core&format=json

31 December 2019

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