(Q31137982)

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Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 June 2017

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

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author name string

Garrett J McKinney

1

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

Ryan K Waples

2

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

Lisa W Seeb

3

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

James E Seeb

4

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Europe PubMed Central

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29 June 2017

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19 October 2016

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Europe PubMed Central

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29 June 2017

Molecular Ecology Resources

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Europe PubMed Central

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29 June 2017

17

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Europe PubMed Central

PubMed publication ID

29 June 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

656-669

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

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21 January 2018

Trade-offs and utility of alternative RADseq methods: reply to Puritz et al.

1 reference

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21 January 2018

Harnessing the power of RADseq for ecological and evolutionary genomics

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21 January 2018

Rapid SNP discovery and genetic mapping using sequenced RAD markers

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21 January 2018

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

1 reference

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21 January 2018

Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

1 reference

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21 January 2018

Stacks: an analysis tool set for population genomics

1 reference

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21 January 2018

Using Mendelian inheritance to improve high-throughput SNP discovery

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

The advantages and disadvantages of being polyploid

1 reference

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21 January 2018

Genome-wide patterns of genetic polymorphism and signatures of selection in Plasmodium vivax

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21 January 2018

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

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21 January 2018

Special features of RAD Sequencing data: implications for genotyping

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21 January 2018

Comparative sequence analysis of the phytochrome C gene and its upstream region in allohexaploid wheat reveals new data on the evolution of its three constituent genomes

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21 January 2018

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

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21 January 2018

Don't throw the baby out with the bathwater: identifying and mapping paralogs in salmonids

1 reference

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21 January 2018

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools.

1 reference

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21 January 2018

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

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21 January 2018

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

1 reference

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21 January 2018

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Comparative mapping between Coho Salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a whole genome duplication event.

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha).

1 reference

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21 January 2018

Identification of Multiple QTL Hotspots in Sockeye Salmon (Oncorhynchus nerka) Using Genotyping-by-Sequencing and a Dense Linkage Map.

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https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis.

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

The Atlantic salmon genome provides insights into rediploidization

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata).

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation.

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing.

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

SNP markers and their impact on plant breeding

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Gene duplication, population genomics, and species-level differentiation within a tropical mountain shrub

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha).

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

The effects of inheritance in tetraploids on genetic diversity and population divergence

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Plant evolutionary genomics

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Evolution from fish to mammals by gene duplication

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Evolutionary consequences of autopolyploidy

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12613

21 January 2018

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

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21 January 2018

Demystifying the RAD fad.

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genepop'007: a complete re-implementation of the genepop software for Windows and Linux

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Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

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Genome duplication, a trait shared by 22000 species of ray-finned fish

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New World tetraploid cottons contain Old World cytoplasm

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21 January 2018

Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by restriction site-associated markers

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21 January 2018

The genetical structure of populations

1 reference

27 May 2022

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Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

1 reference

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Tetraploidy and the Evolution of Salmonid Fishes

1 reference

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Identifiers

10.1111/1755-0998.12613

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 June 2017

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