(Q31140890)

19 October 2017

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps (English)

1 reference

19 October 2017

molecular interaction

1 reference

5

1 reference

19 October 2017

7

1 reference

19 October 2017

Emmanuel Barillot

6

0 references

author name string

Inna Kuperstein

1

1 reference

19 October 2017

David P A Cohen

2

1 reference

19 October 2017

Stuart Pook

3

1 reference

19 October 2017

Eric Viara

4

1 reference

19 October 2017

7 October 2013

1 reference

19 October 2017

1 reference

19 October 2017

7

1 reference

19 October 2017

100

1 reference

describes a project that uses

19 October 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-7-100

0 references

cites work

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

A travel guide to Cytoscape plugins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Critical assessment of human metabolic pathway databases: a stepping stone for future integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Web-based metabolic network visualization with a zooming user interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Connecting the dots: role of standardization and technology sharing in biological simulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

The BioPAX community standard for pathway data sharing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Editing, validating and translating of SBGN maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Payao: a community platform for SBML pathway model curation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Biomolecular pathway databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

The Systems Biology Graphical Notation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

PathBuilder--open source software for annotating and developing pathway resources

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Presenting and exploring biological pathways with PathVisio

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

WikiPathways: pathway editing for the people

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

A comprehensive modular map of molecular interactions in RB/E2F pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

SPIKE--a database, visualization and analysis tool of cellular signaling pathways.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Towards zoomable multidimensional maps of the cell

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

21 June 2018

A lifetime of metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

TRANSPATH: an information resource for storing and visualizing signaling pathways and their pathological aberrations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Reactome: a knowledgebase of biological pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

The KEGG resource for deciphering the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Molecular interaction map of the mammalian cell cycle control and DNA repair systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Zomit: biological data visualization and browsing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-7-100

Practical use of BiNoM: a biological network manager software.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851986

Using process diagrams for the graphical representation of biological networks

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24099179

12 December 2020

inferred from PubMed ID database lookup

Social engineering for virtual 'big science' in systems biology

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24099179

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1752-0509-7-100

1 reference

journals/bmcsb/KupersteinCPVCBZ13

19 October 2017

1 reference

1 reference

DBLP Dataset 2021-01-02

release_haermrxsobeoji27kppru5eedq

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/haermrxsobeoji27kppru5eedq

24 November 2022

mapped directly with Wikidata item

1 reference

19 October 2017

PubMed publication ID

24099179

1 reference