(Q31146667)

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Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Shotgun proteomics

1 reference

based on heuristic

inferred from title

object named as

Cristian Ruse

3

0 references

author name string

Bingwen Lu

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Akira Motoyama

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

John Venable

4

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

John R Yates

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

language of work or name

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publication date

15 February 2008

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Europe PubMed Central

PMC publication ID

13 October 2017

Analytical Chemistry

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Europe PubMed Central

PMC publication ID

13 October 2017

80

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

6

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

2018-2025

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

A platform for accurate mass and time analyses of mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Dynamic range of mass accuracy in LTQ Orbitrap hybrid mass spectrometer

1 reference

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21 June 2018

Advances in proteomics data analysis and display using an accurate mass and time tag approach.

1 reference

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21 June 2018

Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway

1 reference

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21 June 2018

Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Proteomic analyses using an accurate mass and time tag strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Open mass spectrometry search algorithm

1 reference

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21 June 2018

Rapid identification of proteins by peptide-mass fingerprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Global analysis of protein expression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Protein identification: the origins of peptide mass fingerprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

A proteomics approach to understanding protein ubiquitination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Shotgun proteomics: integrating technologies to answer biological questions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Genome-based peptide fingerprint scanning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Two-dimensional liquid separations-mass mapping of proteins from human cancer cell lysates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Shotgun proteomics and biomarker discovery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

A two-dimensional quadrupole ion trap mass spectrometer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Electrostatic axially harmonic orbital trapping: a high-performance technique of mass analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Protein identification by mass profile fingerprinting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Peptide mass maps: a highly informative approach to protein identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

21 June 2018

Tackling the protease problem in Saccharomyces cerevisiae

1 reference

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21 June 2018

Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

31 October 2018

Code developments to improve the efficiency of automated MS/MS spectra interpretation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509208

31 October 2018

A model of random mass-matching and its use for automated significance testing in mass spectrometric proteome analysis.

1 reference

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31 October 2018

Identifiers

10.1021/AC701697W

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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