(Q31155225)

English

Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

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scholarly article

1 reference

Europe PubMed Central

6 September 2017

1 reference

Europe PubMed Central

Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm (English)

1 reference

Europe PubMed Central

6 September 2017

1 reference

based on heuristic

inferred from title

Jeffrey L. Bennetzen

3

object named as

Jeffrey L Bennetzen

1 reference

Europe PubMed Central

6 September 2017

author name string

Jeremy D DeBarry

1

1 reference

Europe PubMed Central

6 September 2017

Renyi Liu

2

1 reference

Europe PubMed Central

6 September 2017

publication date

13 May 2008

1 reference

Europe PubMed Central

6 September 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

6 September 2017

9

1 reference

Europe PubMed Central

6 September 2017

235

1 reference

Europe PubMed Central

6 September 2017

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-235

0 references

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

1 reference

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21 June 2018

Accuracy and quality of massively parallel DNA pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Unequal crossing-over associated with asymmetrical synapsis between nomadic elements in the Drosophila melanogaster genome

1 reference

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21 June 2018

The TIGR Maize Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Evolutionary dynamics of transposable elements at the centromere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Sequence composition, organization, and evolution of the core Triticeae genome

1 reference

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21 June 2018

The repetitive landscape of the chicken genome

1 reference

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21 June 2018

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

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1 reference

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Structure and evolution of the Cinful retrotransposon family of maize.

1 reference

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21 June 2018

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

1 reference

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21 June 2018

Apollo: a sequence annotation editor

1 reference

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21 June 2018

Initial sequencing and comparative analysis of the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Transposable elements and the evolution of genome size in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Automated de novo identification of repeat sequence families in sequenced genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Plant transposable elements: where genetics meets genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Perspective: transposable elements, parasitic DNA, and genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

The genome sequence of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Transposable element contributions to plant gene and genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

The paleontology of intergene retrotransposons of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

The contributions of retroelements to plant genome organization, function and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Drosophila telomeres: new views on chromosome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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Selfish genes, the phenotype paradigm and genome evolution

1 reference

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21 June 2018

Repetitive DNA and chromosome evolution in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

copia-like retrotransposons are ubiquitous among plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412881

21 June 2018

Sequence variation and genomic amplification of a family of Gypsy-like elements in the oomycete genus Phytophthora

1 reference

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31 October 2018

Identification of multiple Gypsy LTR-retrotransposon lineages in vertebrate genomes

1 reference

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The evolution of nuclear genome structure in seed plants

1 reference

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31 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/18474116

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GENOMICS: Not Junk After All

1 reference

https://pubmed.ncbi.nlm.nih.gov/18474116

12 December 2020

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inferred from PubMed ID database lookup

Decoding the rice genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18474116

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Survey of transposable elements from rice genomic sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18474116

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-9-235

1 reference

Europe PubMed Central

6 September 2017

DBLP publication ID

journals/bmcbi/DeBarryLB08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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release_dntryyf6breolhb6bxcmdnngci

1 reference

https://api.fatcat.wiki/v0/release/dntryyf6breolhb6bxcmdnngci

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

6 September 2017

1 reference

Europe PubMed Central

6 September 2017

ResearchGate publication ID

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