(Q31160625)

29 June 2017

Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data (English)

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29 June 2017

1 reference

Dennis V Lavrov

1

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Michelle Kelly

series ordinal

3

object named as

Michelle Kelly

1 reference

29 June 2017

Xiujuan Wang

2

1 reference

29 June 2017

16 May 2008

1 reference

Molecular Phylogenetics and Evolution

29 June 2017

14

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based on heuristic

inferred from page(s)

published in

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29 June 2017

49

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29 June 2017

1

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29 June 2017

111-124

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MtArt: A New Model of Amino Acid Replacement for Arthropoda

29 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Population size does not influence mitochondrial genetic diversity in animals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

The complete mitochondrial genome of the demosponge Negombata magnifica (Poecilosclerida)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

The ordinal and subclass classification of the Demospongiae (Porifera); appraisal of the present arrangement, and proposal of a new order

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Widespread horizontal transfer of mitochondrial genes in flowering plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Big trees from little genomes: mitochondrial gene order as a phylogenetic tool.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Phylogenetic analysis of the Hsp70 sequences reveals the monophyly of Metazoa and specific phylogenetic relationships between animals and fungi.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Sponge paraphyly and the origin of Metazoa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Systematics and evolution of Demospongiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Sequencing complete mitochondrial and plastid genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Exploring the relationship between sequence similarity and accurate phylogenetic trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Non-monophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Broad phylogenomic sampling improves resolution of the animal tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Mitochondrial diversity of early-branching metazoa is revealed by the complete mt genome of a haplosclerid demosponge

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Base-calling of automated sequencer traces using phred. II. Error probabilities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Inference from Iterative Simulation Using Multiple Sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Ancient phylogenetic relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Glass sponges and bilaterian animals share derived mitochondrial genomic features: a common ancestry or parallel evolution?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Buddenbrockia is a cnidarian worm

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

An analysis of partial 28S ribosomal RNA sequences suggests early radiations of sponges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Key transitions in animal evolution: a mitochondrial DNA perspective.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Poriferan mtDNA and Animal Phylogeny Based on Mitochondrial Gene Arrangements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Transfer RNA gene recruitment in mitochondrial DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

SOAP, cleaning multiple alignments from unstable blocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Mitochondrial genome of Suberites domuncula: palindromes and inverted repeats are abundant in non-coding regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Inferring phylogeny despite incomplete lineage sorting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Major discrepancy between phylogenetic hypotheses based on molecular and morphological criteria within the Order Haplosclerida (Phylum Porifera: Class Demospongiae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

An evaluation of support for order-level monophyly and interrelationships within the class Demospongiae using partial data from the large subunit rDNA and cytochrome oxidase subunit I.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Reassessment of the classification of the Order Haplosclerida (Class Demospongiae, Phylum Porifera) using 18S rRNA gene sequence data.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Rare genomic changes as a tool for phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

MrBayes 3: Bayesian phylogenetic inference under mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

A post-synaptic scaffold at the origin of the animal kingdom

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Molecular phylogeny of the freshwater sponges in Lake Baikal

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): A linear DNA molecule encoding a putative DNA-dependent DNA polymerase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Poriferan paraphyly and its implications for Precambrian palaeobiology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

The Staden sequence analysis package

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

Demospongiae (Porifera) from northern Bass Strait, southern Australia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

A hypercalcified sponge with soft relatives: Vaceletia is a keratose demosponge.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.05.014

10.1016/J.YMPEV.2008.05.014

7 January 2021

Identifiers

DOI

1 reference

29 June 2017

1 reference

PubMed ID

18583159