(Q31172579)

16 August 2017

The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins (English)

1 reference

16 August 2017

4

Valerie Daggett

1 reference

16 August 2017

David A C Beck

1

1 reference

16 August 2017

Darwin O V Alonso

series ordinal

2

1 reference

16 August 2017

Daigo Inoyama

series ordinal

3

1 reference

16 August 2017

language of work or name

English

0 references

publication date

19 August 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

16 August 2017

105

1 reference

16 August 2017

34

1 reference

16 August 2017

12259-12264

1 reference

Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Conformational entropy of alanine versus glycine in protein denatured states

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

The pleated sheet, a new layer configuration of polypeptide chains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Atomic Coordinates and Structure Factors for Two Helical Configurations of Polypeptide Chains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Revisiting the Ramachandran plot: Hard‐sphere repulsion, electrostatics, and H‐bonding in the α‐helix

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Stereochemistry of polypeptide chain configurations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Conformations of amino acids in proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

ASTRAL compendium enhancements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRView

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Local water bridges and protein conformational stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Modulation of intrinsic phi,psi propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a beta-hairpin peptide.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

A helix propensity scale based on experimental studies of peptides and proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Conformation of Polypeptides and Proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Accurate measurements of coupling constants from two-dimensional nuclear magnetic resonance spectra of proteins and determination of phi-angles.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Conformation of the backbone in unfolded proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Methods for molecular dynamics simulations of protein folding/unfolding in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Conformational properties of a peptide model for unfolded alpha-helices.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2527899

The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGG

31 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706527105

Context is a major determinant of β-sheet propensity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18713857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0706527105

1 reference

16 August 2017

0 references

1 reference

16 August 2017

PubMed publication ID

18713857

1 reference