(Q33184404)

23 July 2017

title

PrfA protein of Bacillus species: prediction and demonstration of endonuclease activity on DNA (English)

1 reference

23 July 2017

2

Peter Setlow

1 reference

23 July 2017

1

Daniel J Rigden

1 reference

23 July 2017

Barbara Setlow

3

1 reference

23 July 2017

Irina Bagyan

series ordinal

4

1 reference

23 July 2017

Richard A Stein

series ordinal

5

1 reference

23 July 2017

Mark J Jedrzejas

series ordinal

6

1 reference

23 July 2017

publication date

1 October 2002

1 reference

23 July 2017

1 reference

23 July 2017

volume

11

1 reference

23 July 2017

issue

10

1 reference

23 July 2017

page(s)

2370-2381

1 reference

Use of non-crystallographic symmetry in protein structure refinement

23 July 2017

cites work

1 reference

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A cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus is actually a broad specificity phosphatase

21 June 2018

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The junction-resolving enzymes.

21 June 2018

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The X philes: structure-specific endonucleases that resolve Holliday junctions

21 June 2018

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Identification and characterization of the dif Site from Bacillus subtilis

21 June 2018

1 reference

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

21 June 2018

1 reference

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Structural modeling of a plant disease resistance gene product domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

PvuII endonuclease contains two calcium ions in active sites

21 June 2018

1 reference

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Enhanced genome annotation using structural profiles in the program 3D-PSSM

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

SAWTED: structure assignment with text description--enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons.

21 June 2018

1 reference

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Comparison of sequence profiles. Strategies for structural predictions using sequence information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Penicillin-binding protein-related factor A is required for proper chromosome segregation in Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

A structural model for the rolA protein and its interaction with DNA.

21 June 2018

1 reference

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CAFASP-1: critical assessment of fully automated structure prediction methods

21 June 2018

1 reference

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FtsK-dependent and -independent pathways of Xer site-specific recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Type II restriction endonucleases: structural, functional and evolutionary relationships

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Holliday junction processing in bacteria: insights from the evolutionary conservation of RuvABC, RecG, and RusA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Septal localization of penicillin-binding protein 1 in Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Hidden Markov models for detecting remote protein homologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Transcriptional analysis of the Staphylococcus aureus penicillin binding protein 2 gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Genetic recombination in Bacillus subtilis 168: effects of recU and recS mutations on DNA repair and homologous recombination.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Chromosome partitioning in bacteria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

PHD: predicting one-dimensional protein structure by profile-based neural networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

How to measure and predict the molar absorption coefficient of a protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Prevention of DNA damage in spores and in vitro by small, acid-soluble proteins from Bacillus species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

ALSCRIPT: a tool to format multiple sequence alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Comparative protein modelling by satisfaction of spatial restraints

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Recognition of errors in three-dimensional structures of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Structure of PvuII endonuclease with cognate DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Molecular structures of penicillin-binding proteins and beta-lactamases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Cloning, nucleotide sequence, and mutagenesis of the Bacillus subtilis ponA operon, which codes for penicillin-binding protein (PBP) 1 and a PBP-related factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Site-specific recombination in the replication terminus region of Escherichia coli: functional replacement of dif

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Binding of DNA in vitro by a small, acid-soluble spore protein from Bacillus subtilis and the effect of this binding on DNA topology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Improved methods for building protein models in electron density maps and the location of errors in these models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

Assessment of protein models with three-dimensional profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

The active site of the junction-resolving enzyme T7 endonuclease I.

21 June 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

Cell division, guillotining of dimer chromosomes and SOS induction in resolution mutants (dif, xerC and xerD) of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

Automated extraction of information on protein-protein interactions from the biological literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

Structural genomics takes off.

21 January 2018

1 reference

https://api.crossref.org/works/10.1110%2FPS.0216802

Hybrid fold recognition: combining sequence derived properties with evolutionary information.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

A method for the improvement of threading-based protein models

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373696

DNA topoisomerase and recombinase activities in Nae I restriction endonuclease

31 October 2018

1 reference

12 December 2020

Production and characterization of the functional fragment of pneumococcal surface protein A

1 reference

12 December 2020

Practical limits of function prediction

1 reference

12 December 2020

Binding and cleavage of nicked substrates by site-specific recombinases XerC and XerD

1 reference

12 December 2020

Structural characterization of penicillin-binding protein-related factor A (PrfA) from Bacillus species

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.0216802

1 reference

23 July 2017

1 reference

23 July 2017

1 reference