(Q33202244)

23 July 2017

title

A genomic selection strategy to identify accessible and dimerization blocking targets in the 5'-UTR of HIV-1 RNA (English)

1 reference

23 July 2017

4

Anna Podhajska

1 reference

23 July 2017

Martin R Jakobsen

1

1 reference

ORCID Public Data File 2021

author name string

Christian K Damgaard

series ordinal

2

1 reference

23 July 2017

Ebbe S Andersen

series ordinal

3

1 reference

23 July 2017

Jørgen Kjems

series ordinal

5

1 reference

23 July 2017

language of work or name

English

0 references

publication date

23 April 2004

1 reference

23 July 2017

published in

Nucleic Acids Research

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23 July 2017

volume

32

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23 July 2017

issue

7

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23 July 2017

page(s)

e67

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RNA interactions in the 5' region of the HIV-1 genome

23 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

The activity of siRNA in mammalian cells is related to structural target accessibility: a comparison with antisense oligonucleotides

21 June 2018

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Antisense technologies. Improvement through novel chemical modifications

21 June 2018

1 reference

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Dimerization and template switching in the 5' untranslated region between various subtypes of human immunodeficiency virus type 1.

21 June 2018

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Genomic signature tags (GSTs): a system for profiling genomic DNA.

21 June 2018

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Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal

21 June 2018

1 reference

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Structural and functional properties of the HIV-1 RNA-tRNA(Lys)3 primer complex annealed by the nucleocapsid protein: comparison with the heat-annealed complex

21 June 2018

1 reference

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The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription

21 June 2018

1 reference

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Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

21 June 2018

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Hybridization of antisense reagents to RNA.

21 June 2018

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Mapping of RNA accessible sites by extension of random oligonucleotide libraries with reverse transcriptase.

21 June 2018

1 reference

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Two alternating structures of the HIV-1 leader RNA

21 June 2018

1 reference

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Selecting optimal antisense reagents

21 June 2018

1 reference

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Multiple biological roles associated with the repeat (R) region of the HIV-1 RNA genome

21 June 2018

1 reference

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The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure

21 June 2018

1 reference

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RNA mapping: selection of potent oligonucleotide sequences for antisense experiments

21 June 2018

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A theoretical approach to select effective antisense oligodeoxyribonucleotides at high statistical probability

21 June 2018

1 reference

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Structural basis for the specificity of the initiation of HIV-1 reverse transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Selecting effective antisense reagents on combinatorial oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Probing accessible sites for ribozymes on human acetylcholinesterase RNA.

21 June 2018

1 reference

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Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries

21 June 2018

1 reference

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Specific inhibition of expression of a human collagen gene (COL1A1) with modified antisense oligonucleotides. The most effective target sites are clustered in double-stranded regions of the predicted secondary structure for the mRNA.

21 June 2018

1 reference

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Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Probing the structure of RNAs in solution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Multiple secondary structure rearrangements during HIV-1 RNA dimerization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=407842

The efficacy of small interfering RNAs targeted to the type 1 insulin-like growth factor receptor (IGF1R) is influenced by secondary structure in the IGF1R transcript

31 October 2018

1 reference

12 December 2020

Mechanisms of Inhibition ofin VitroDimerization of HIV Type I RNA by Sense and Antisense Oligonucleotides

1 reference

12 December 2020

Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity

1 reference

12 December 2020

Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries

1 reference

12 December 2020

Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GNH064

1 reference

23 July 2017

1 reference

23 July 2017

1 reference