(Q33236758)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

review article

1 reference

title

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

5

1 reference

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18 January 2020

Wolfgang Florian Fricke

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Rainer Merkl

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

Stephan Waack

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Oliver Keller

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Roman Asper

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Thomas Brodag

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Katharina Surovcik

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Peter Meinicke

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

publication date

16 March 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

142

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-142

18 January 2020

exact match

0 references

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21 June 2018

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Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance

21 June 2018

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Hairpin telomeres and genome plasticity in Borrelia: all mixed up in the end.

21 June 2018

1 reference

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Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity

21 June 2018

1 reference

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Detection and characterization of horizontal transfers in prokaryotes using genomic signature

21 June 2018

1 reference

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The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number

21 June 2018

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Comparative genomic structure of prokaryotes

21 June 2018

1 reference

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The Complete Genome Sequence of Bacillus licheniformis DSM13, an Organism with Great Industrial Potential

21 June 2018

1 reference

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The complete genome sequence of Propionibacterium acnes, a commensal of human skin

21 June 2018

1 reference

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Biased biological functions of horizontally transferred genes in prokaryotic genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

SIGI: score-based identification of genomic islands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Gene prediction with a hidden Markov model and a new intron submodel

21 June 2018

1 reference

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Prophages and bacterial genomics: what have we learned so far?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Prokaryotic evolution in light of gene transfer

21 June 2018

1 reference

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The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea

21 June 2018

1 reference

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Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

21 June 2018

1 reference

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Detection of genes with atypical nucleotide sequence in microbial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Detection of lateral gene transfer among microbial genomes.

21 June 2018

1 reference

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Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

21 June 2018

1 reference

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On surrogate methods for detecting lateral gene transfer

21 June 2018

1 reference

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Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

21 June 2018

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Computational inference of homologous gene structures in the human genome

21 June 2018

1 reference

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Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria

21 June 2018

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21 June 2018

1 reference

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Horizontal gene transfer in bacterial and archaeal complete genomes

21 June 2018

1 reference

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Pathogenicity islands and the evolution of microbes

21 June 2018

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DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

21 June 2018

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Lateral gene transfer and the nature of bacterial innovation

21 June 2018

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Using database matches with for HMMGene for automated gene detection in Drosophila

21 June 2018

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Horizontal gene transfer and the origin of species: lessons from bacteria.

21 June 2018

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21 June 2018

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21 June 2018

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Codon usage and lateral gene transfer in Bacillus subtilis

21 June 2018

1 reference

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Detecting alien genes in bacterial genomes

21 June 2018

1 reference

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Codon usage tabulated from the international DNA sequence databases; its status 1999

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Molecular archaeology of the Escherichia coli genome

21 June 2018

1 reference

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Prediction of complete gene structures in human genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Amelioration of bacterial genomes: rates of change and exchange

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Lysogenic conversion by a filamentous phage encoding cholera toxin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Complete nucleotide sequence of a skin element excised by DNA rearrangement during sporulation in Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Codon catalog usage and the genome hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Characterization of PBSX, a defective prophage of Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

A comparative categorization of gene flux in diverse microbial species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Limitations of compositional approach to identifying horizontally transferred genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

Two methods for improving performance of an HMM and their application for gene finding.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1489950

31 October 2018

1 reference

12 December 2020

A comparative categorization of protein function encoded in bacterial or archeal genomic islands

1 reference

12 December 2020

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement)

1 reference

12 December 2020

G+C3 Structuring Along the Genome: A Common Feature in Prokaryotes

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-7-142

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/WaackKABDFSMM06

18 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16542435%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

16542435

1 reference