(Q21093605)

English

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 July 2017

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance (English)

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Europe PubMed Central

PubMed publication ID

5 July 2017

comparative genomics

1 reference

based on heuristic

inferred from title

Deinococcus radiodurans

object named as

Deinococcus radiodurans

1 reference

based on heuristic

inferred from title

Thermus thermophilus

object named as

Thermus thermophilus

1 reference

based on heuristic

inferred from title

8

object named as

Eugene V Koonin

author given names

Eugene V

author last names

Koonin

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

2

object named as

Yuri I Wolf

author given names

Yuri I

author last names

Wolf

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

9

object named as

Kira S Makarova

author given names

Kira S

author last names

Makarova

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Marina V Omelchenko

1

author given names

Marina V

author last names

Omelchenko

object named as

Marina V Omelchenko

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Elena K Gaidamakova

3

author given names

Elena K

author last names

Gaidamakova

object named as

Elena K Gaidamakova

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Vera A Matrosova

4

author given names

Vera Y

author last names

Matrosova

object named as

Vera Y Matrosova

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

6

author given names

Min

author last names

Zhai

object named as

Min Zhai

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

author name string

Alexander Vasilenko

5

author given names

Alexander

author last names

Vasilenko

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Michael J Daly

7

author given names

Michael J

author last names

Daly

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Europe PubMed Central

PubMed publication ID

5 July 2017

language of work or name

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publication date

20 October 2005

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Europe PubMed Central

PubMed publication ID

5 July 2017

BMC Evolutionary Biology

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Europe PubMed Central

PubMed publication ID

5 July 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

1

0 references

57

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

CDD: a Conserved Domain Database for protein classification

1 reference

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19 March 2017

Genomic and proteomic adaptations to growth at high temperature

1 reference

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19 March 2017

Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1

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19 March 2017

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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19 March 2017

The genome sequence of the extreme thermophile Thermus thermophilus

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New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

1 reference

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19 March 2017

The COG database: an updated version includes eukaryotes

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19 March 2017

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ

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19 March 2017

Comparative genomics of Archaea: how much have we learned in six years, and what's next?

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19 March 2017

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

1 reference

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19 March 2017

Genome trees constructed using five different approaches suggest new major bacterial clades

1 reference

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19 March 2017

Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics

1 reference

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19 March 2017

The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

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19 March 2017

Postsegregational killing does not increase plasmid stability but acts to mediate the exclusion of competing plasmids

1 reference

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19 March 2017

Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation

1 reference

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Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

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SARPs: a family of secreted apoptosis-related proteins

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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19 March 2017

The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species

1 reference

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19 March 2017

Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation

1 reference

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

19 March 2017

The crystal structure of Dps, a ferritin homolog that binds and protects DNA

1 reference

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19 March 2017

Manganese superoxide dismutase from Thermus thermophilus. A structural model refined at 1.8 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

19 March 2017

PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation

1 reference

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19 March 2017

Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance

1 reference

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MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases

1 reference

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19 March 2017

Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability

1 reference

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19 March 2017

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

19 March 2017

Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

19 March 2017

AGAINST ALL ODDS:The Survival Strategies of Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

19 March 2017

Pathways of Oxidative Damage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

7 April 2017

Identification of genes that are associated with DNA repeats in prokaryotes

1 reference

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7 April 2017

Horizontal gene transfer in prokaryotes: quantification and classification

1 reference

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7 April 2017

Genome phylogeny based on gene content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

7 April 2017

Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

1 reference

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7 April 2017

How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress

1 reference

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12 September 2017

Methionine sulfoxide reductases: ubiquitous enzymes involved in antioxidant defense, protein regulation, and prevention of aging-associated diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

An RNA ligase from Deinococcus radiodurans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Cloning, deletion, and characterization of PadR, the transcriptional repressor of the phenolic acid decarboxylase-encoding padA gene of Lactobacillus plantarum

1 reference

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12 September 2017

The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Potential genomic determinants of hyperthermophily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea

1 reference

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12 September 2017

Characterization of a fourth tungsten-containing enzyme from the hyperthermophilic archaeon Pyrococcus furiosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Genome trees and the tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds

1 reference

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12 September 2017

The role of lineage-specific gene family expansion in the evolution of eukaryotes

1 reference

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12 September 2017

The role of iron in Campylobacter gene regulation, metabolism and oxidative stress defense

1 reference

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12 September 2017

Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study

1 reference

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12 September 2017

Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium

1 reference

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12 September 2017

Inactivation of two homologues of proteins presumed to be involved in the desiccation tolerance of plants sensitizes Deinococcus radiodurans R1 to desiccation

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12 September 2017

A poxvirus-like type IB topoisomerase family in bacteria

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12 September 2017

A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction.

1 reference

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12 September 2017

Aldehyde oxidoreductases from Pyrococcus furiosus.

1 reference

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12 September 2017

Thermophilic adaptation of proteins

1 reference

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1 reference

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Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae

1 reference

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12 September 2017

Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches

1 reference

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12 September 2017

Physiologic determinants of radiation resistance in Deinococcus radiodurans

1 reference

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12 September 2017

Ionizing-radiation resistance in the desiccation-tolerant cyanobacterium Chroococcidiopsis

1 reference

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12 September 2017

Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

12 September 2017

Why is Deinococcus radiodurans so resistant to ionizing radiation?

1 reference

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1 reference

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12 September 2017

Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species

1 reference

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12 September 2017

Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs.

1 reference

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12 September 2017

Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes

1 reference

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12 September 2017

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12 September 2017

Protective mechanisms against peptide and protein peroxides generated by singlet oxygen

1 reference

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27 September 2017

CO dehydrogenase

1 reference

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27 September 2017

Axe-Txe, a broad-spectrum proteic toxin-antitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium

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30 May 2018

Patterns of temperature adaptation in proteins from Methanococcus and Bacillus

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30 May 2018

DNA polymerase C of the thermophilic bacterium Thermus aquaticus: classification and phylogenetic analysis of the family C DNA polymerases

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30 May 2018

Comparative studies on biochemical properties of an extreme thermophile, Thermus thermophilus HB 8 (author's transl)

1 reference

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30 May 2018

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1 reference

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29 November 2018

Differential DNA binding and protection by dimeric and dodecameric forms of the ferritin homolog Dps from Deinococcus radiodurans.

1 reference

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29 November 2018

An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea

1 reference

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29 November 2018

Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans.

1 reference

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29 November 2018

High temperature dependence of 2,4-dichlorophenoxyacetic acid degradation by Fe3+/H(2)O(2) system

1 reference

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29 November 2018

Repair of oxidized proteins. Identification of a new methionine sulfoxide reductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

The closest BLAST hit is often not the nearest neighbor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

Patterns of temperature adaptation in proteins from the bacteria Deinococcus radiodurans and Thermus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

The Nudix hydrolases of Deinococcus radiodurans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

Structural and Genomic Correlates of Hyperthermostability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

Phylogenetic Diversity of the Deinococci as Determined by 16S Ribosomal DNA Sequence Comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274311

29 November 2018

Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The scavenging of superoxide radical by manganous complexes: In vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SHOT: a web server for the construction of genome phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the maximum likelihood method in molecular phylogenetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/16242020

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-5-57

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Dimensions Publication ID

0 references

release_w4esdeogzfe25b3jvzgddiqnjm

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

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