(Q33242489)

24 July 2017

title

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress (English)

1 reference

24 July 2017

Huiquan Wang

1

1 reference

24 July 2017

Craig J Benham

series ordinal

2

1 reference

24 July 2017

publication date

5 May 2006

1 reference

24 July 2017

1 reference

24 July 2017

volume

7

1 reference

24 July 2017

page(s)

248

1 reference

Creative Commons Attribution 2.0 Generic

24 July 2017

copyright license

start time

5 May 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-248

0 references

cites work

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1468432

A novel method for prokaryotic promoter prediction based on DNA stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1468432

Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1468432

Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

21 June 2018

1 reference

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RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

21 June 2018

1 reference

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DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

21 June 2018

1 reference

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A DNA structural atlas for Escherichia coli

21 June 2018

1 reference

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Improved microbial gene identification with GLIMMER

21 June 2018

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

21 June 2018

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 June 2018

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

21 June 2018

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Escherichia coli promoter sequences: analysis and prediction

21 June 2018

1 reference

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Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

21 June 2018

1 reference

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Compilation and analysis ofEscherichia colipromoter DNA sequences

21 June 2018

1 reference

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Analysis of E. coli promoter sequences

21 June 2018

1 reference

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Regulatory sequences involved in the promotion and termination of RNA transcription

21 June 2018

1 reference

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The analysis of stress-induced duplex destabilization in long genomic DNA sequences

21 June 2018

1 reference

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Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

31 October 2018

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Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome

31 October 2018

1 reference

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How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

31 October 2018

1 reference

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Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence

31 October 2018

1 reference

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CURVATURE: software for the analysis of curved DNA.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1468432

Determination of common structural features in Escherichia coli promoters by computer analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1468432

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16677393

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Curvature distribution in prokaryotic genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16677393

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-248

1 reference

24 July 2017

DBLP publication ID

journals/bmcbi/WangB06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference