(Q33245808)

24 July 2017

Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design (English)

1 reference

24 July 2017

Jody M Mason

1

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author name string

Mark A Schmitz

series ordinal

2

1 reference

24 July 2017

Kristian M Müller

series ordinal

3

1 reference

24 July 2017

Katja M Arndt

series ordinal

4

1 reference

24 July 2017

language of work or name

English

0 references

publication date

5 June 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

24 July 2017

1 reference

24 July 2017

103

1 reference

24 July 2017

8989-8994

1 reference

24 July 2017

24

1 reference

The design of coiled-coil structures and assemblies

24 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

The structure of alpha-helical coiled coils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Coiled coil domains: stability, specificity, and biological implications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Predicting specificity in bZIP coiled-coil protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

AP-1: a double-edged sword in tumorigenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Comprehensive identification of human bZIP interactions with coiled-coil arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Comparison of in vivo selection and rational design of heterodimeric coiled coils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

AP-1 as a regulator of cell life and death

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Role of interfacial hydrophobic residues in the stabilization of the leucine zipper structures of the transcription factors c-Fos and c-Jun

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

AP-1 blockade inhibits the growth of normal and malignant breast cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

A heterodimeric coiled-coil peptide pair selected in vivo from a designed library-versus-library ensemble.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

An in vivo library-versus-library selection of optimized protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

An autonomous folding unit mediates the assembly of two-stranded coiled coils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

A helix propensity scale based on experimental studies of peptides and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

DNA binding and transactivation properties of Fos variants with homodimerization capacity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

A dominant negative to activation protein-1 (AP1) that abolishes DNA binding and inhibits oncogenesis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Automated design of the surface positions of protein helices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

MultiCoil: a program for predicting two- and three-stranded coiled coils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Buried polar residues and structural specificity in the GCN4 leucine zipper

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Native-like and structurally characterized designed alpha-helical bundles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Predicting oligomerization states of coiled coils

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Packing and hydrophobicity effects on protein folding and stability: effects of beta-branched amino acids, valine and isoleucine, on the formation and stability of two-stranded alpha-helical coiled coils/leucine zippers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Stability of alpha-helices

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

21 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

N- and C-capping preferences for all 20 amino acids in alpha-helical peptides

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Predicting coiled coils by use of pairwise residue correlations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Viral and cellular fos proteins are complexed with a 39,000-dalton cellular protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Secondary structure predictions and medium range interactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

DNA binding activities of three murine Jun proteins: stimulation by Fos.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Preferential heterodimer formation by isolated leucine zippers from fos and jun

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

The product of a novel growth factor activated gene, fos B, interacts with JUN proteins enhancing their DNA binding activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

The product of a fos-related gene, fra-1, binds cooperatively to the AP-1 site with Jun: transcription factor AP-1 is comprised of multiple protein complexes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

The leucine repeat motif in Fos protein mediates complex formation with Jun/AP-1 and is required for transformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Difference in transcriptional regulatory function between c-Fos and Fra-2.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482553

Peptide 'Velcro': design of a heterodimeric coiled coil.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

Complementation of buried lysine and surface polar residues in a designed heterodimeric coiled coil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

Inter-helical interactions in the leucine zipper coiled coil dimer: pH and salt dependence of coupling energy between charged amino acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: amino acids I, V, L, N, A, and K.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

Designing heterodimeric two-stranded alpha-helical coiled-coils. Effects of hydrophobicity and alpha-helical propensity on protein folding, stability, and specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509880103

Mechanism of specificity in the Fos-Jun oncoprotein heterodimer

21 January 2018

1 reference

12 December 2020

Synthesis and properties of the peptide corresponding to the mutant form of the leucine zipper of the transcriptional activator GCN4 from yeast

1 reference

12 December 2020

Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design

1 reference

12 December 2020

Characteristic features of amino acid residues in coiled-coil protein structures

1 reference

12 December 2020

Two pairs of oppositely charged amino acids from Jun and Fos confer heterodimerization to GCN4 leucine zipper

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0509880103

1 reference

24 July 2017

0 references

1 reference

24 July 2017

1 reference