(Q33272833)

25 July 2017

title

Identifying dramatic selection shifts in phylogenetic trees (English)

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25 July 2017

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Karin S Dorman

1

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publication date

8 February 2007

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25 July 2017

published in

BMC Evolutionary Biology

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25 July 2017

volume

7 Suppl 1

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25 July 2017

page(s)

S10

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https://scigraph.springernature.com/pub.10.1186/1471-2148-7-s1-s10

25 July 2017

exact match

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cites work

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21 June 2018

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21 June 2018

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Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Success of maximum likelihood phylogeny inference in the four-taxon case

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

A method for estimating the number of invariant amino acid coding positions in a gene using cytochrome c as a model case

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Further improvements in the method of testing for evolutionary homology among proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

The estimate of total nucleotide substitutions from pairwise differences is biased

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Evidence from nuclear sequences that invariable sites should be considered when sequence divergence is calculated

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

An improved statistical method for detecting heterotachy in nucleotide sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Dual multiple change-point model leads to more accurate recombination detection.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Covarion structure in plastid genome evolution: a new statistical test

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

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31 October 2018

1 reference

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31 October 2018

1 reference

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31 October 2018

1 reference

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31 October 2018

1 reference

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31 October 2018

1 reference

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31 October 2018

1 reference

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31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Maximum-likelihood approach for gene family evolution under functional divergence.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Relationships within and between genotypes of hepatitis B virus at points across the genome: footprints of recombination in certain isolates

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

The root of the tree of life in the light of the covarion model

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes

31 October 2018

1 reference

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Large-scale prediction of function shift in protein families with a focus on enzymatic function

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Dimerization in Aminergic G-Protein-Coupled Receptors: Application of a Hidden-Site Class Model of Evolution†

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

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Recombination in HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1796604

Statistical methods for testing functional divergence after gene duplication

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Testing a covariotide model of DNA substitution

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12 December 2020

General time-reversible distances with unequal rates across sites: mixing gamma and inverse Gaussian distributions with invariant sites

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Estimates of DNA and protein sequence divergence: an examination of some assumptions

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How molecules evolve in eubacteria

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Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

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Limitations of the evolutionary parsimony method of phylogenetic analysis

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12 December 2020

10.1186/1471-2148-7-S1-S10

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25 July 2017

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25 July 2017

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