(Q33276592)

25 July 2017

title

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment (English)

1 reference

25 July 2017

Yvette M Piceno

5

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Eoin L. Brodie

object named as

Eoin L Brodie

2

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Gary L Andersen

object named as

Gary L Andersen

6

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Jordan P Moberg

object named as

Jordan P Moberg

3

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author name string

Todd Z DeSantis

1

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25 July 2017

Ingrid X Zubieta

4

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25 July 2017

language of work or name

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2 March 2007

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25 July 2017

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25 July 2017

volume

53

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25 July 2017

issue

3

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25 July 2017

page(s)

371-383

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https://scigraph.springernature.com/pub.10.1007/s00248-006-9134-9

25 July 2017

exact match

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cites work

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

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Crossref

https://api.crossref.org/works/10.1007%2FS00248-006-9134-9

Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria

21 January 2018

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Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale.

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

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ARB: a software environment for sequence data

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Bias in template-to-product ratios in multitemplate PCR

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Magnetic, microplate-format plasmid isolation protocol for high-yield, sequencing-grade DNA

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Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

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12 December 2020

Development and evaluation of functional gene arrays for detection of selected genes in the environment

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12 December 2020

Novel techniques for analysing microbial diversity in natural and perturbed environments

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Empirical and theoretical bacterial diversity in four Arizona soils

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Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

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Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients

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Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays

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Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.

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Sequence-specific identification of 18 pathogenic microorganisms using microarray technology.

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Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.

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Microarrays for bacterial detection and microbial community analysis

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Taking arrays from the lab to the field: trying to make sense of the unknown

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Oligonucleotide microarray for identification ofEnterococcusspecies

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Directional cDNA library construction assisted by the in vitro recombination reaction

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Base-calling of automated sequencer traces using phred. II. Error probabilities

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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

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Improved assessment of denitrifying, N2-fixing, and total-community bacteria by terminal restriction fragment length polymorphism analysis using multiple restriction enzymes

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Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

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High-density microarray of small-subunit ribosomal DNA probes

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Novel major bacterial candidate division within a municipal anaerobic sludge digester

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Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments

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Prominent occurrence of ribosomes from an uncultured bacterium of the Verrucomicrobiales cluster in grassland soils

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Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries

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An orthogonal oligonucleotide protecting group strategy that enables assembly of repetitive or highly structured DNAs

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Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation

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Archaeal population dynamics during sequential reduction processes in rice field soil

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Accessing genetic information with high-density DNA arrays.

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Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives

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Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community

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Reoxidation of bioreduced uranium under reducing conditions

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Escherichia coli gene expression responsive to levels of the response regulator EvgA.

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Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses

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Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring

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DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples

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Enumeration of total bacteria and bacteria with genes for proteolytic activity in pure cultures and in environmental samples by quantitative PCR mediated amplification.

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Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures

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Primer3 on the WWW for general users and for biologist programmers

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Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction.

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Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples

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Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

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Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing

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Computational improvements reveal great bacterial diversity and high metal toxicity in soil

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Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

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12 December 2020

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12 December 2020

Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation

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12 December 2020

Counting the uncountable: statistical approaches to estimating microbial diversity

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12 December 2020

Status of the Microbial Census

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12 December 2020

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

1 reference

12 December 2020

10.1007/S00248-006-9134-9

Identifiers

DOI

1 reference

Dimensions Publication ID

25 July 2017

1012794989

0 references

1 reference