(Q33280167)

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HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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Dhwani K Desai

2

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author name string

Prashant K Srivastava

1

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Europe PubMed Central

PubMed publication ID

25 July 2017

Soumyadeep Nandi

3

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Andrew M Lynn

4

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Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

27 March 2007

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Europe PubMed Central

PubMed publication ID

25 July 2017

BMC Bioinformatics

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Europe PubMed Central

PubMed publication ID

25 July 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

104

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Functional classification using phylogenomic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER

1 reference

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21 June 2018

A comprehensive update of the sequence and structure classification of kinases

1 reference

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21 June 2018

Protein homology detection by HMM-HMM comparison

1 reference

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21 June 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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21 June 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

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The conformational plasticity of protein kinases

1 reference

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Classifying G-protein coupled receptors with support vector machines

1 reference

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Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

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21 June 2018

Assessing the accuracy of prediction algorithms for classification: an overview

1 reference

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Gene ontology: tool for the unification of biology

1 reference

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21 June 2018

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

1 reference

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The ENZYME database in 2000

1 reference

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Convergent evolution of Trichomonas vaginalis lactate dehydrogenase from malate dehydrogenase

1 reference

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21 June 2018

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Structural and functional aspects of G protein-coupled receptor oligomerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

A learning method of hidden Markov models for sequence discrimination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

ALSCRIPT: a tool to format multiple sequence alignments

1 reference

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21 June 2018

Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

21 June 2018

Subfamily hmms in functional genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

31 October 2018

Improving profile HMM discrimination by adapting transition probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

31 October 2018

COACH: profile-profile alignment of protein families using hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

31 October 2018

Hybrid alignment: high-performance with universal statistics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

31 October 2018

Analysis and prediction of functional sub-types from protein sequence alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852395

31 October 2018

A discriminative framework for detecting remote protein homologies

1 reference

https://pubmed.ncbi.nlm.nih.gov/17389042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-8-104

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

DBLP publication ID

journals/bmcbi/SrivastavaDNL07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

ResearchGate publication ID

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