(Q33282586)

25 July 2017

title

Is multiple-sequence alignment required for accurate inference of phylogeny? (English)

1 reference

25 July 2017

1 reference

1 reference

Mark A Ragan

2

0 references

author name string

Michael Höhl

series ordinal

1

1 reference

25 July 2017

publication date

1 April 2007

1 reference

25 July 2017

1 reference

25 July 2017

volume

56

1 reference

25 July 2017

issue

2

1 reference

25 July 2017

page(s)

206-221

1 reference

A word-oriented approach to alignment validation

25 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Highways of gene sharing in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Searching for convergence in phylogenetic Markov chain Monte Carlo

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A measure of the similarity of sets of sequences not requiring sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

PHYLOGENIES FROM RESTRICTION SITES: A MAXIMUM-LIKELIHOOD APPROACH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A likelihood approach to estimating phylogeny from discrete morphological character data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

An information-based sequence distance and its application to whole mitochondrial genome phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

The reconstructed evolutionary process

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A new sequence distance measure for phylogenetic tree construction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Integrated gene and species phylogenies from unaligned whole genome protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Deriving an amino acid distance matrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

The average common substring approach to phylogenomic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Metrics for comparing regulatory sequences on the basis of pattern counts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Alignment-free sequence comparison-a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Comparative evaluation of word composition distances for the recognition of SCOP relationships.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

On the complexity of multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A measure of DNA sequence dissimilarity based on Mahalanobis distance between frequencies of words.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Genomic classification using an information-based similarity index: application to the SARS coronavirus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701294741

A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space

21 January 2018

1 reference

12 December 2020

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

1 reference

12 December 2020

The rapid generation of mutation data matrices from protein sequences

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

Pattern-based phylogenetic distance estimation and tree reconstruction.

1 reference

12 December 2020

Local homology recognition and distance measures in linear time using compressed amino acid alphabets

1 reference

12 December 2020

10.1080/10635150701294741

Identifiers

DOI

1 reference

25 July 2017

1 reference