(Q33283875)

25 July 2017

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title

The use of molecular techniques based on ribosomal RNA and DNA for rumen microbial ecosystem studies: a review (English)

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25 July 2017

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Metha Wanapat

4

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author name string

Weidong Deng

series ordinal

1

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25 July 2017

Dongmei Xi

series ordinal

2

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25 July 2017

Huaming Mao

series ordinal

3

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25 July 2017

publication date

5 May 2007

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Molecular Biology Reports

25 July 2017

published in

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25 July 2017

volume

35

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25 July 2017

issue

2

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25 July 2017

page(s)

265-274

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maintained by WikiProject

25 July 2017

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Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 185 rRNA.

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11033-007-9079-1

16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11033-007-9079-1

A comparison of enzymatic and molecular approaches to characterize the cellulolytic microbial ecosystems of the rumen and the cecum

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11033-007-9079-1

Phylogenetic analysis of archaea in three fractions of cow rumen based on the 16S rDNA sequence

21 January 2018

1 reference

12 December 2020

1 reference

12 December 2020

Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism.

1 reference

12 December 2020

Molecular ecological analysis of the gastrointestinal microbiota: a review.

1 reference

12 December 2020

Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche

1 reference

12 December 2020

Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase

1 reference

12 December 2020

Invited review: adhesion mechanisms of rumen cellulolytic bacteria

1 reference

12 December 2020

Kinetic PCR Analysis: Real-time Monitoring of DNA Amplification Reactions

1 reference

12 December 2020

Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

1 reference

12 December 2020

Mycobacterium malmoense-specific nested PCR based on a conserved sequence detected in random amplified polymorphic DNA fingerprints

1 reference

12 December 2020

Kinetics of in sacco fiber-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR.

1 reference

12 December 2020

Effect of condensed tannins on bacterial diversity and metabolic activity in the rat gastrointestinal tract

1 reference

12 December 2020

Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen

1 reference

12 December 2020

Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria

1 reference

12 December 2020

The physiological and genetic diversity of bovine Streptococcus bovis strains(1)

1 reference

12 December 2020

Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels

1 reference

12 December 2020

How many ruminal bacteria are there?

1 reference

12 December 2020

Molecular diversity of rumen methanogens from sheep in Western Australia.

1 reference

12 December 2020

Assessment of ciliates in the sheep rumen by DGGE.

1 reference

12 December 2020

DGGE/TGGE a method for identifying genes from natural ecosystems.

1 reference

12 December 2020

Effects of 2-hydroxy-4-(methylthio) butanoic acid (HMB) on microbial growth in continuous culture

1 reference

12 December 2020

Ribosomal RNA phylogeny and the primary lines of evolutionary descent

1 reference

12 December 2020

Phylogenetic analysis of methanogens from the bovine rumen

1 reference

12 December 2020

Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology

1 reference

12 December 2020

Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes.

1 reference

12 December 2020

On the nature of global classification

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12 December 2020

Fibrolytic activities and cellulolytic bacterial community structure in the solid and liquid phases of rumen contents.

1 reference

12 December 2020

The effect of protozoa on the composition of rumen bacteria in cattle using 16S rRNA gene clone libraries

1 reference

12 December 2020

Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells

1 reference

12 December 2020

Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53

1 reference

12 December 2020

Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA.

1 reference

12 December 2020

1 reference

12 December 2020

Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches.

1 reference

12 December 2020

Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets.

1 reference

12 December 2020

Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology.

1 reference

12 December 2020

Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota.

1 reference

12 December 2020

A re-appraisal of the diversity of the methanogens associated with the rumen ciliates

1 reference

12 December 2020

Technical note: Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminal samples of cows

1 reference

12 December 2020

Phylogeny of the rumen ciliates Entodinium, Epidinium and Polyplastron (Litostomatea:Entodiniomorphida) inferred from small subunit ribosomal RNA sequences

1 reference

12 December 2020

Genus- and species-specific identification of mycoplasmas by 16S rRNA amplification.

1 reference

12 December 2020

Myristic acid supports the immediate inhibitory effect of lauric acid on ruminal methanogens and methane release

1 reference

12 December 2020

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

1 reference

12 December 2020

ARDRA and RAPD analyses of human and animal isolates of Streptococcus gallolyticus

1 reference

12 December 2020

Use of DNA probes to monitor nutritional effects on ruminal prokaryotes and Fibrobacter succinogenes S85

1 reference

12 December 2020

Isolation and identification of ruminal methanogens from grazing cattle

1 reference

12 December 2020

Phylogenetic analysis of methanogens in sheep rumen ecosystem and detection of Methanomicrobium mobile By fluorescence in situ hybridization

1 reference

12 December 2020

PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples

1 reference

12 December 2020

Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens

1 reference

12 December 2020

Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis

1 reference

12 December 2020

Development and validation of a nested-PCR-denaturing gradient gel electrophoresis method for taxonomic characterization of bifidobacterial communities

1 reference

12 December 2020

Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens

1 reference

12 December 2020

Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota.

1 reference

12 December 2020

Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR.

1 reference

12 December 2020

Enumeration of Megasphaera elsdenii in rumen contents by real-time Taq nuclease assay

1 reference

12 December 2020

Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies

1 reference

12 December 2020

Use of the 16S–23S ribosomal genes spacer region in studies of prokaryotic diversity

1 reference

12 December 2020

Phylogenetic analysis of protozoa in the rumen contents of cow based on the 18S rDNA sequences

1 reference

12 December 2020

Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria

1 reference

12 December 2020

Differential amplification of rRNA genes by polymerase chain reaction

1 reference

12 December 2020

Development of a competitive polymerase chain reaction assay for the ruminal bacterium Butyrivibrio fibrisolvens OB156 and its use for tracking an OB156-derived recombinant

1 reference

12 December 2020

Identification of major Streptococcal species by rrn-amplified ribosomal DNA restriction analysis

1 reference

12 December 2020

Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR.

1 reference

12 December 2020

Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows

1 reference

12 December 2020

Applications of network BLAST server

1 reference

12 December 2020

Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints

1 reference

12 December 2020

Most-probable-number procedures for enumerating ruminal bacteria, including the simultaneous estimation of total and cellulolytic numbers in one medium

1 reference

12 December 2020

Ammonia-hyperproducing bacteria from New Zealand ruminants

1 reference

12 December 2020

The RDP-II (Ribosomal Database Project).

1 reference

12 December 2020

Prokaryote diversity in the rumen of yak (Bos grunniens) and Jinnan cattle (Bos taurus) estimated by 16S rDNA homology analyses

1 reference

12 December 2020

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

1 reference

12 December 2020

Microbial ecology and evolution: a ribosomal RNA approach

1 reference

12 December 2020

Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis.

1 reference

12 December 2020

Analysis of 16S rDNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum

1 reference

12 December 2020

Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria.

1 reference

12 December 2020

Phylogenetic study of methanogens associated with rumen ciliates

1 reference

12 December 2020

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics.

1 reference

12 December 2020

Comparison of microbial populations in model and natural rumens using 16S ribosomal RNA-targeted probes

1 reference

12 December 2020

Analysis of the 5.8S rRNA gene and the internal transcribed spacers in Naegleria spp. and in N. fowleri

1 reference

12 December 2020

Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen

1 reference

12 December 2020

Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR.

1 reference

12 December 2020

Genetic homogeneity and phage susceptibility of ruminal strains of Streptococcus bovis isolated in Australia

1 reference

12 December 2020

Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences

1 reference

12 December 2020

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

1 reference

12 December 2020

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

1 reference

12 December 2020

10.1007/S11033-007-9079-1

Identifiers

DOI

1 reference

Dimensions Publication ID

25 July 2017

1032115985

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