(Q33286326)

English

On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 July 2017

On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

2

object named as

Eugene V Koonin

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

1

object named as

Yuri I Wolf

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

31 May 2007

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

https://scigraph.springernature.com/pub.10.1186/1745-6150-2-14

0 references

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An RNA-making reactor for the origin of life

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Extreme accumulation of nucleotides in simulated hydrothermal pore systems

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The ribosome as an RNA-based molecular machine.

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How ribosomes make peptide bonds

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1 reference

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Structure of the 70S ribosome complexed with mRNA and tRNA

1 reference

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Rapid peptide bond formation on isolated 50S ribosomal subunits

1 reference

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Re-creating an RNA world

1 reference

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Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain

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The ribosomal peptidyl transferase center: structure, function, evolution, inhibition

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On the origin of genomes and cells within inorganic compartments

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A diminutive and specific RNA binding site for L-tryptophan

1 reference

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The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells

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Real ribozymes suggest a relaxed error threshold

1 reference

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Group II intron retroelements: function and diversity

1 reference

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Echoes from the past--are we still in an RNP world?

1 reference

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RNA affinity for molecular L-histidine; genetic code origins

1 reference

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The catalytic diversity of RNAs

1 reference

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Origins of the genetic code: the escaped triplet theory.

1 reference

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Structure and assembly of group I introns

1 reference

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21 June 2018

Structure, folding and mechanisms of ribozymes

1 reference

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Ribozyme catalysis: not different, just worse

1 reference

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The origin of the genetic code: theories and their relationships, a review

1 reference

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The origin of subfunctions and modular gene regulation.

1 reference

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1 reference

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The natural history of group I introns

1 reference

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21 June 2018

Mobile group II introns

1 reference

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21 June 2018

The driving force for molecular evolution of translation

1 reference

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21 June 2018

Prebiotic Chemistry and the Origin of the RNA World

1 reference

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Directed evolution of nucleic acid enzymes

1 reference

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Viroids: the minimal non-coding RNAs with autonomous replication

1 reference

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Comparative genomics, minimal gene-sets and the last universal common ancestor

1 reference

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A peptidyl transferase ribozyme capable of combinatorial peptide synthesis

1 reference

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1 reference

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1 reference

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The case for an error minimizing standard genetic code

1 reference

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Selection of the simplest RNA that binds isoleucine

1 reference

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The maintenance of the accuracy of protein synthesis and its relevance to ageing

1 reference

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On protein synthesis

1 reference

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Some consequences of the RNA world hypothesis

1 reference

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RNA, the first macromolecular catalyst: the ribosome is a ribozyme

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Group II introns: structure and catalytic versatility of large natural ribozymes

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Analyzing partially randomized nucleic acid pools: straight dope on doping

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In search of an RNA replicase ribozyme

1 reference

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Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases

1 reference

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Database for mobile group II introns

1 reference

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RNase P RNA-mediated catalysis

1 reference

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1 reference

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Trends in protein evolution inferred from sequence and structure analysis.

1 reference

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The involvement of RNA in ribosome function

1 reference

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The chemical repertoire of natural ribozymes

1 reference

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The antiquity of RNA-based evolution

1 reference

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Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.

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Classification and evolution of P-loop GTPases and related ATPases

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Ribosome structure and the mechanism of translation

1 reference

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RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension

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The exaptive excellence of spandrels as a term and prototype

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The structural basis of ribosome activity in peptide bond synthesis

1 reference

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The impact of comparative genomics on our understanding of evolution

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Guilt by association: the arginine case revisited

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Early fixation of an optimal genetic code

1 reference

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Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

1 reference

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Physico-chemical constraints connected with the coding properties of the genetic system

1 reference

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The probability of duplicate gene preservation by subfunctionalization

1 reference

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A tiny RNA that catalyzes both aminoacyl-RNA and peptidyl-RNA synthesis

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Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

1 reference

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Did DNA replication evolve twice independently?

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21 June 2018

Selection, history and chemistry: the three faces of the genetic code.

1 reference

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The origin of the genetic code: amino acids as cofactors in an RNA world

1 reference

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Specific, rapid synthesis of Phe-RNA by RNA.

1 reference

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21 June 2018

Codons and hypercycles

1 reference

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21 June 2018

Peptidyl-transferase ribozymes: trans reactions, structural characterization and ribosomal RNA-like features

1 reference

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Rhyme or reason: RNA-arginine interactions and the genetic code

1 reference

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21 June 2018

The genetic code is one in a million

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21 June 2018

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

1 reference

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21 June 2018

Amino acids as RNA ligands: a direct-RNA-template theory for the code's origin.

1 reference

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21 June 2018

The role of robustness and changeability on the origin and evolution of genetic codes

1 reference

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21 June 2018

Relics from the RNA world

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21 June 2018

The path from the RNA world.

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21 June 2018

Peptide bond formation by in vitro selected ribozymes

1 reference

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21 June 2018

From replicators to reproducers: the first major transitions leading to life

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21 June 2018

Coding coenzyme handles: a hypothesis for the origin of the genetic code

1 reference

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21 June 2018

Aminoacyl-RNA synthesis catalyzed by an RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

Function and structure relationships in DNA polymerases

1 reference

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21 June 2018

Genetic code correlations: differential rates of non-enzymatic activation of hydrophobic amino acids by ATP.

1 reference

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21 June 2018

Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

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21 June 2018

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

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21 June 2018

Evolution of the genetic apparatus

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The fundamental nature of the genetic code: prebiotic interactions between polynucleotides and polyamino acids or their derivatives

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The molecular basis for the genetic code

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21 June 2018

On the evolution of the genetic code

1 reference

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Order in the genetic code

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Selforganization of matter and the evolution of biological macromolecules

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Central Dogma of Molecular Biology

1 reference

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21 June 2018

The origin of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

How old is the genetic code? Statistical geometry of tRNA provides an answer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

Catalysis by the RNA subunit of RNase P--a minireview

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

Group selection of early replicators and the origin of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

An attempt to unify the structure of polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

A speculation on the origin of protein synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

Hypercycles and the origin of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

21 June 2018

Getting from an RNA world to modern cells just got a little easier

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

New ligase-derived RNA polymerase ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

The triplet code from first principles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

A versatile tRNA aminoacylation catalyst based on RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Processivity of ribozyme-catalyzed RNA polymerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Catalysis of ribosomal translocation by sparsomycin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

"Living" under the challenge of information decay: the stochastic corrector model vs. hypercycles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

A selected ribozyme catalyzing diverse dipeptide synthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Continuous in vitro evolution of a ribozyme that catalyzes three successive nucleotidyl addition reactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

RNA-catalyzed amino acid activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

The scene of a frozen accident

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Isoleucine:RNA sites with associated coding sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Directed evolution of an RNA enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1894784

31 October 2018

Transfer-RNA: the early adaptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemically-selective nucleotide-amino acid interactions in aqueous solution. A PMR study

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding constants of phenylalanine for the four mononucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ribosome revealed

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The case for the anticode

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of the tRNA molecule: implications for the origin of protein synthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential structures of a self-aminoacylating RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nature of the Biological Code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Substrate 2'-hydroxyl groups required for ribozyme-catalyzed polymerization

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide-amino acid interactions and their relation to the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A quantitative measure of error minimization in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A quantitative measure of error minimization in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for the interaction of nucleotides with immobilized amino-acids and its significance for the origin of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biotin carboxylase comes into the fold

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribozyme-catalysed amino-acid transfer reactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the Fundamental Nature and Evolution of the Genetic Code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17540026

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1745-6150-2-14

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1745-6150-2-14

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

ResearchGate publication ID

0 references

Sitelinks

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