(Q33287743)

25 July 2017

title

An improved method for identifying functionally linked proteins using phylogenetic profiles (English)

1 reference

25 July 2017

1 reference

Matteo Pellegrini

3

0 references

author name string

Shawn Cokus

series ordinal

1

1 reference

25 July 2017

Sayaka Mizutani

series ordinal

2

1 reference

25 July 2017

publication date

22 May 2007

1 reference

25 July 2017

1 reference

25 July 2017

volume

8 Suppl 4

1 reference

25 July 2017

issue

Suppl 4

1 reference

25 June 2019

page(s)

S7

1 reference

Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks

25 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Identifying metabolic enzymes with multiple types of association evidence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Predicting functional gene links from phylogenetic-statistical analyses of whole genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Prolinks: a database of protein functional linkages derived from coevolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

K-ary clustering with optimal leaf ordering for gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Whole genome-based phylogenetic analysis of free-living microorganisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Identification of functional links between genes using phylogenetic profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

A tree kernel to analyse phylogenetic profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892086

Inferring functional linkages between proteins from evolutionary scenarios

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570150

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detection of parallel functional modules by comparative analysis of genome sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570150

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-S4-S7

1 reference

25 July 2017

DBLP publication ID

journals/bmcbi/CokusMP07

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference