(Q33288615)

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Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: toward a high-throughput method for microbial diversity studies in soil

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 July 2017

Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: toward a high-throughput method for microbial diversity studies in soil (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

electrophoresis

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microbial ecology

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microbial diversity

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Pierre Taberlet

6

object named as

Pierre Taberlet

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5

object named as

Ludovic Gielly

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Europe PubMed Central

PubMed publication ID

25 July 2017

object named as

Lucie Zinger

1

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author name string

Jérôme Gury

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

Frédéric Giraud

3

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Europe PubMed Central

PubMed publication ID

25 July 2017

Serge Krivobok

4

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Roberto A Geremia

7

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Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

22 June 2007

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Europe PubMed Central

PubMed publication ID

25 July 2017

Microbial Ecology

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Europe PubMed Central

PubMed publication ID

25 July 2017

54

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Europe PubMed Central

PubMed publication ID

25 July 2017

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

203-216

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Europe PubMed Central

PubMed publication ID

25 July 2017

Bias in template-to-product ratios in multitemplate PCR

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https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial community dynamics during production of registered designation of origin Salers cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis

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https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ecological linkages between aboveground and belowground biota

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https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils

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https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

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Interactions and self-organization in the soil-microbe complex.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity of the archaeal community in 44 anaerobic digesters as determined by single strand conformation polymorphism analysis and 16S rDNA sequencing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition and facilitation of nucleic acid amplification

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity, dynamics and activity of bacterial populations in 'Registered Designation of Origin' Salers cheese by single-strand conformation polymorphism analysis of 16S rRNA genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrieval of nearly complete 16S rRNA gene sequences from environmental DNA following 16S rRNA-based community fingerprinting

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of Mycobacterium species by multiple-fluorescence PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification and characterization of a common soil component which inhibits the polymerase chain reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-strand conformation polymorphism analysis of candidate genes for reliable identification of alleles by capillary array electrophoresis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular identification of bacteria by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantification of bias related to the extraction of DNA directly from soils

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

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Genetic Diversity through the Looking Glass: Effect of Enrichment Bias.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methods of studying soil microbial diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three stages of a biofilm community developing at the liquid-liquid interface between polychlorinated biphenyls and water

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Technical challenges in applying capillary electrophoresis-single strand conformation polymorphism for routine genetic analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy source

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA extraction from soils: old bias for new microbial diversity analysis methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Sensitivity of Single-Strand Conformation Polymorphism Analysis for the Detection of Single Base Substitutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact of different in vitro electron donor/acceptor conditions on potential chemolithoautotrophic communities from marine pelagic redoxclines

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Capillary electrophoresis single-strand conformation polymorphism analysis for monitoring soil bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput single nucleotide polymorphism typing by fluorescent single-strand conformation polymorphism analysis with capillary electrophoresis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA recovery from soils of diverse composition.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

1 reference

https://pubmed.ncbi.nlm.nih.gov/17587075

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00248-006-9151-8

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Dimensions Publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

ResearchGate publication ID

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