(Q33291756)

English

Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in Ymf genes

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scholarly article

1 reference

Europe PubMed Central

25 July 2017

Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in Ymf genes (English)

1 reference

Europe PubMed Central

25 July 2017

author name string

Mike M Moradian

1

1 reference

Europe PubMed Central

25 July 2017

Denis Beglaryan

2

1 reference

Europe PubMed Central

25 July 2017

Jill M Skozylas

3

1 reference

Europe PubMed Central

25 July 2017

Varand Kerikorian

4

1 reference

Europe PubMed Central

25 July 2017

language of work or name

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publication date

25 July 2007

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Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

2

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Europe PubMed Central

25 July 2017

7

1 reference

Europe PubMed Central

25 July 2017

e650

1 reference

Europe PubMed Central

25 July 2017

copyright license

Creative Commons Attribution 4.0 International

25 July 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Genomic regions exhibiting positive selection identified from dense genotype data

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21 June 2018

Positive selection of a pre-expansion CAG repeat of the human SCA2 gene

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21 June 2018

DnaSP, DNA polymorphism analyses by the coalescent and other methods

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21 June 2018

WU-Blast2 server at the European Bioinformatics Institute

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21 June 2018

The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes

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21 June 2018

Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes

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21 June 2018

Ratios of radical to conservative amino acid replacement are affected by mutational and compositional factors and may not be indicative of positive Darwinian selection

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21 June 2018

Comparative genomics of mitochondrial DNA in Drosophila simulans

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Enhanced genome annotation using structural profiles in the program 3D-PSSM

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Expression of mitochondrial protein-coding genes in Tetrahymena pyriformis

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Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA.

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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Mitochondrial evolution

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Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics

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An automated hydrodynamic process for controlled, unbiased DNA shearing

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Base-calling of automated sequencer traces using phred. II. Error probabilities

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21 June 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

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Genome structure and gene content in protist mitochondrial DNAs

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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21 June 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

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21 June 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

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21 June 2018

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

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21 June 2018

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

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CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

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Telomeric repeats of Tetrahymena malaccensis mitochondrial DNA: a multimodal distribution that fluctuates erratically during growth

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Mitochondrial telomeres: surprising diversity of repeated telomeric DNA sequences among six species of Tetrahymena

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Topoisomerase I has a strong binding preference for a conserved hexadecameric sequence in the promoter region of the rRNA gene from Tetrahymena pyriformis

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Fast and sensitive multiple sequence alignments on a microcomputer

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

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Searching through sequence databases

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Complete sequence of the extrachromosomal rDNA molecule from the ciliate Tetrahymena thermophila strain B1868VII.

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Rapid and sensitive sequence comparison with FASTP and FASTA

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Transcription and replication of animal mitochondrial DNAs.

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Induction and isolation of mutants in Tetrahymena

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An ancestral mitochondrial DNA resembling a eubacterial genome in miniature.

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Rhodopsin evolution in the dark.

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High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans.

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Models of amino acid substitution and applications to mitochondrial protein evolution.

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SWAPSC: sliding window analysis procedure to detect selective constraints.

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ADAPTIVE EVOLUTION OF PHOTORECEPTORS AND VISUAL PIGMENTS IN VERTEBRATES

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Mitochondrial DNA in Tetrahymena pyriformis

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Contrasting selection modes at the Adh1 locus in outcrossing Miscanthus sinensis vs. inbreeding Miscanthus condensatus (Poaceae)

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12 December 2020

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Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17653277

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0000650

1 reference

Europe PubMed Central

25 July 2017

2007PLoSO...2..650M

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1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

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