(Q33306609)

25 July 2017

1 reference

title

Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography (English)

1 reference

25 July 2017

0 references

2

1 reference

25 July 2017

Miguel Arenas

1

0 references

publication date

20 November 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

458

1 reference

Creative Commons Attribution 2.0 Generic

25 July 2017

start time

20 November 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-458

0 references

cites work

Evolution and ecology of MHC molecules: from genomics to sexual selection

1 reference

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EVOLUTION IN MENDELIAN POPULATIONS

21 June 2018

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Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data

21 June 2018

1 reference

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Fast "coalescent" simulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

CoaSim: a flexible environment for simulating genetic data under coalescent models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Bayesian analysis of an admixture model with mutations and arbitrarily linked markers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

HyPhy: hypothesis testing using phylogenies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

SelSim: a program to simulate population genetic data with natural selection and recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Comparative evaluation of a new effective population size estimator based on approximate bayesian computation

21 June 2018

1 reference

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The causes and consequences of HIV evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

A coalescent model of recombination hotspots

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Approximate Bayesian computation in population genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

The evolutionary genomics of pathogen recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Evaluation of methods for detecting recombination from DNA sequences: empirical data

21 June 2018

1 reference

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Generating samples under a Wright-Fisher neutral model of genetic variation

21 June 2018

1 reference

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SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography

21 June 2018

1 reference

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

21 June 2018

1 reference

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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Evolution of intrahost HIV-1 genetic diversity during chronic infection.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Simulating haplotype blocks in the human genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206059

Potential impact of recombination on sitewise approaches for detecting positive natural selection

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18028540

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-458

1 reference

25 July 2017

journals/bmcbi/ArenasP07

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18028540