(Q33309351)

25 July 2017

A systematic approach to detecting transcription factors in response to environmental stresses (English)

1 reference

25 July 2017

1 reference

Wen-Hsiung Li

3

0 references

author name string

Li-Hsieh Lin

series ordinal

1

1 reference

PubMed ID

18067669

25 July 2017

Hsiao-Ching Lee

series ordinal

2

1 reference

PubMed ID

18067669

25 July 2017

Bor-Sen Chen

series ordinal

4

1 reference

25 July 2017

8 December 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

473

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-473

25 July 2017

0 references

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Refinement and expansion of signaling pathways: the osmotic response network in yeast

21 June 2018

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Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle

21 June 2018

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Identification of transcription factor cooperativity via stochastic system model

21 June 2018

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Deciphering principles of transcription regulation in eukaryotic genomes.

21 June 2018

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Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification

21 June 2018

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TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.

21 June 2018

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Inferring gene regulatory relationships by combining target-target pattern recognition and regulator-specific motif examination.

21 June 2018

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms

21 June 2018

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Expression of YAP4 in Saccharomyces cerevisiae under osmotic stress

21 June 2018

1 reference

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The essential transcription factor Reb1p interacts with the CLB2 UAS outside of the G2/M control region.

21 June 2018

1 reference

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Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

21 June 2018

1 reference

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TRANSFAC: transcriptional regulation, from patterns to profiles

21 June 2018

1 reference

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Targeting the MEF2-like transcription factor Smp1 by the stress-activated Hog1 mitogen-activated protein kinase

21 June 2018

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Transcriptional regulatory networks and the yeast cell cycle

21 June 2018

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Computational systems biology

21 June 2018

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Transcriptional regulatory networks in Saccharomyces cerevisiae

21 June 2018

1 reference

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Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Osmotic stress signaling and osmoadaptation in yeasts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

The G(1) cyclin Cln3 promotes cell cycle entry via the transcription factor Swi6

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Systems biology: a brief overview

21 June 2018

1 reference

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Serial regulation of transcriptional regulators in the yeast cell cycle

21 June 2018

1 reference

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Regulatory element detection using correlation with expression.

21 June 2018

1 reference

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Genome-wide location and function of DNA binding proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Genomic expression programs in the response of yeast cells to environmental changes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

TRANSFAC: an integrated system for gene expression regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Identification of genetic networks from a small number of gene expression patterns under the Boolean network model.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Transcriptional activation by recruitment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

The Skn7 response regulator controls gene expression in the oxidative stress response of the budding yeast Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Heat shock transcription factors: structure and regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

21 June 2018

Stress response of yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

MAC1, a nuclear regulatory protein related to Cu-dependent transcription factors is involved in Cu/Fe utilization and stress resistance in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Yeast Skn7p functions in a eukaryotic two-component regulatory pathway.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Cell cycle regulated transcription in yeast.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Translational control of GCN4: an in vivo barometer of initiation-factor activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

RAP1: a protean regulator in yeast.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Using a state-space model with hidden variables to infer transcription factor activities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Computational discovery of gene modules and regulatory networks

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Genetic tests of the role of Abf1p in driving transcription of the yeast TATA box bindng protein-encoding gene, SPT15.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2257980

Yeast Skn7p activity is modulated by the Sln1p-Ypd1p osmosensor and contributes to regulation of the HOG pathway

31 October 2018

1 reference

12 December 2020

A System for Identifying Genetic Networks from Gene Expression Patterns Produced by Gene Disruptions and Overexpressions

1 reference

12 December 2020

Inferring qualitative relations in genetic networks and metabolic pathways

1 reference

12 December 2020

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-473

1 reference

25 July 2017

journals/bmcbi/LinLLC07

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18067669