(Q33311610)

English

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.

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30 December 2019

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response (English)

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30 December 2019

Tetsuya Sakurai

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30 December 2019

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30 December 2019

Fausto Rodríguez-Zapata

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30 December 2019

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30 December 2019

Kazuo Shinozaki

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30 December 2019

Atsushi Ishiwata

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Atsushi Ishiwata

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30 December 2019

Manabu Ishitani

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Manabu Ishitani

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30 December 2019

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Andrés Salcedo

5

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30 December 2019

Atsushi Toyoda

6

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30 December 2019

Joe Tohme

8

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30 December 2019

Yoshiyuki Sakaki

9

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30 December 2019

publication date

20 December 2007

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30 December 2019

BMC Plant Biology

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30 December 2019

7

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30 December 2019

66

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30 December 2019

Quantitative assessment of relationship between sequence similarity and function similarity

1 reference

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21 June 2018

Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings

1 reference

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21 June 2018

WEGO: a web tool for plotting GO annotations

1 reference

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21 June 2018

Genome-wide analysis of plant glutaredoxin systems

1 reference

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21 June 2018

From genomics to chemical genomics: new developments in KEGG

1 reference

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21 June 2018

Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries

1 reference

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21 June 2018

Orthologs, paralogs, and evolutionary genomics

1 reference

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21 June 2018

Genome-wide identification of potential plant E2F target genes

1 reference

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21 June 2018

The map-based sequence of the rice genome

1 reference

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21 June 2018

Peroxisomal monodehydroascorbate reductase. Genomic clone characterization and functional analysis under environmental stress conditions

1 reference

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21 June 2018

The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes.

1 reference

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21 June 2018

Polyploidy and genome evolution in plants

1 reference

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21 June 2018

Cassava biology and physiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

A unigene catalogue of 5700 expressed genes in cassava.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

An EST resource for cassava and other species of Euphorbiaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Reactive oxygen gene network of plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

A novel NADPH thioredoxin reductase, localized in the chloroplast, which deficiency causes hypersensitivity to abiotic stress in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

EST clustering error evaluation and correction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Plant glutaredoxins: still mysterious reducing systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

The thioredoxin h system of higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

1 reference

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21 June 2018

The Gene Ontology (GO) database and informatics resource

1 reference

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21 June 2018

RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Plant biotechnology for crop improvement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Generation of cyanogen-free transgenic cassava

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Primer-design for multiplexed genotyping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Exploring plant genomes by RNA-induced gene silencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Oxidative stress, antioxidants and stress tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Prediction of plant microRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Development and mapping of SSR markers for maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Signal transduction during oxidative stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Functional annotation of a full-length Arabidopsis cDNA collection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

Abiotic stress signal transduction in plants: Molecular and genetic perspectives

1 reference

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21 June 2018

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification

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21 June 2018

Functional annotation of a full-length mouse cDNA collection

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21 June 2018

Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray

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21 June 2018

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

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21 June 2018

Functional analysis of oxidative stress-activated mitogen-activated protein kinase cascade in plants

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21 June 2018

A pigment-binding protein essential for regulation of photosynthetic light harvesting.

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21 June 2018

Cytochromes P-450 from cassava (Manihot esculenta Crantz) catalyzing the first steps in the biosynthesis of the cyanogenic glucosides linamarin and lotaustralin. Cloning, functional expression in Pichia pastoris, and substrate specificity of [...]

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

21 June 2018

KEGG: kyoto encyclopedia of genes and genomes

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21 June 2018

Primer3 on the WWW for general users and for biologist programmers

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21 June 2018

CAP3: A DNA sequence assembly program

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21 June 2018

The use of gene clusters to infer functional coupling

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21 June 2018

A computer program for aligning a cDNA sequence with a genomic DNA sequence

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21 June 2018

Mitogen-activated protein kinase cascades as regulators of stress responses

1 reference

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21 June 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

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21 June 2018

Comparison of DNA sequences with protein sequences.

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21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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21 June 2018

Sequence mapping by electronic PCR

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21 June 2018

Starch biosynthesis

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21 June 2018

Cassava: a basic energy source in the tropics

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21 June 2018

Mite and Insect Pests of Cassava

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31 October 2018

Genetic modification of cassava for enhanced starch production.

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31 October 2018

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31 October 2018

Production of ethanol from liquefied cassava starch using co-immobilized cells of Zymomonas mobilis and Saccharomyces diastaticus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

31 October 2018

Cassava plants with a depleted cyanogenic glucoside content in leaves and tubers. Distribution of cyanogenic glucosides, their site of synthesis and transport, and blockage of the biosynthesis by RNA interference technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245942

31 October 2018

Oxidative stress responses during cassava post-harvest physiological deterioration.

1 reference

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31 October 2018

Detecting putative orthologs.

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31 October 2018

The relation of starch phosphorylases to starch metabolism in wheat

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31 October 2018

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

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31 October 2018

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

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31 October 2018

Stress-Induced Phenylpropanoid Metabolism

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31 October 2018

Effect of abscisic acid on active oxygen species, antioxidative defence system and oxidative damage in leaves of maize seedlings

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31 October 2018

Expression of aluminum-induced genes in transgenic arabidopsis plants can ameliorate aluminum stress and/or oxidative stress.

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31 October 2018

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31 October 2018

The global cassava partnership for genetic improvement

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https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Where next for genome sequencing?

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https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Features of Arabidopsis genes and genome discovered using full-length cDNAs

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags

1 reference

https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parallel Changes in H2O2and Catalase during Thermotolerance Induced by Salicylic Acid or Heat Acclimation in Mustard Seedlings

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https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxidative stress causes ferredoxin-NADP+ reductase solubilization from the thylakoid membranes in methyl viologen-treated plants

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https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cassava, Manihot esculenta Crantz, genetic resources: origin of the crop, its evolution and relationships with wild relatives

1 reference

https://pubmed.ncbi.nlm.nih.gov/18096061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2229-7-66

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18096061%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

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PMC publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18096061%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18096061%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

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