(Q33316397)

25 July 2017

title

The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment (English)

1 reference

25 July 2017

main subject

horizontal gene transfer

0 references

author name string

Wagied Davids

series ordinal

1

1 reference

25 July 2017

Zhaolei Zhang

series ordinal

2

1 reference

25 July 2017

publication date

24 January 2008

1 reference

25 July 2017

published in

BMC Evolutionary Biology

1 reference

25 July 2017

volume

8

1 reference

25 July 2017

page(s)

23

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-23

25 July 2017

exact match

0 references

cites work

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Operon formation is driven by co-regulation and not by horizontal gene transfer

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Horizontal gene transfer among genomes: the complexity hypothesis

21 June 2018

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21 June 2018

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21 June 2018

1 reference

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Collective dynamics of 'small-world' networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

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21 June 2018

1 reference

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Selfish operons and speciation by gene transfer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Amelioration of bacterial genomes: rates of change and exchange

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Selfish operons: horizontal transfer may drive the evolution of gene clusters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Determining divergence times of the major kingdoms of living organisms with a protein clock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Codon usage in bacteria: correlation with gene expressivity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Enzyme recruitment in evolution of new function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Detecting putative orthologs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Functional evolution of the yeast protein interaction network

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

QuickTree: building huge Neighbour-Joining trees of protein sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Reconciling the many faces of lateral gene transfer.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Codon bias and base composition are poor indicators of horizontally transferred genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2259305

Preferential Attachment in the Protein Network Evolution

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18218112

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The proteins of linked genes evolve at similar rates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18218112

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Natural selection promotes the conservation of linkage of co-expressed genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18218112

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-8-23

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-23

9 September 2019

1 reference

25 July 2017

1 reference