(Q33320137)

25 July 2017

title

Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset (English)

1 reference

protein-protein interaction

25 July 2017

main subject

1 reference

Jie Guo

1

1 reference

25 July 2017

Xiaomei Wu

series ordinal

2

1 reference

25 July 2017

Da-Yong Zhang

series ordinal

3

1 reference

25 July 2017

Kui Lin

series ordinal

4

1 reference

25 July 2017

language of work or name

English

0 references

publication date

14 February 2008

1 reference

25 July 2017

published in

Nucleic Acids Research

1 reference

25 July 2017

volume

36

1 reference

25 July 2017

issue

6

1 reference

25 July 2017

page(s)

2002-2011

1 reference

InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

25 July 2017

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1 reference

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21 June 2018

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21 June 2018

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How complete are current yeast and human protein-interaction networks?

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The many faces of protein-protein interactions: A compendium of interface geometry

21 June 2018

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21 June 2018

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Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

1 reference

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Assessing the limits of genomic data integration for predicting protein networks

21 June 2018

1 reference

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Kernel methods for predicting protein-protein interactions

21 June 2018

1 reference

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Linear motifs: evolutionary interaction switches.

21 June 2018

1 reference

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Disruption of protein-protein interactions: towards new targets for chemotherapy

21 June 2018

1 reference

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Filtering high-throughput protein-protein interaction data using a combination of genomic features

21 June 2018

1 reference

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Dynamic Complex Formation During the Yeast Cell Cycle

21 June 2018

1 reference

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Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction

21 June 2018

1 reference

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iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions

21 June 2018

1 reference

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Analyzing cellular biochemistry in terms of molecular networks

21 June 2018

1 reference

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A map of the interactome network of the metazoan C. elegans

21 June 2018

1 reference

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IntAct: an open source molecular interaction database

21 June 2018

1 reference

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MIPS: analysis and annotation of proteins from whole genomes

21 June 2018

1 reference

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A protein interaction map of Drosophila melanogaster

21 June 2018

1 reference

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A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Identification of the Receptor Binding Domain of the Mouse Mammary Tumor Virus Envelope Protein

21 June 2018

1 reference

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Structure-function analysis of reovirus binding to junctional adhesion molecule 1. Implications for the mechanism of reovirus attachment

21 June 2018

1 reference

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Statistical significance for genomewide studies

21 June 2018

1 reference

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

21 June 2018

1 reference

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

21 June 2018

1 reference

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How reliable are experimental protein-protein interaction data?

21 June 2018

1 reference

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Binding of small molecules to an adaptive protein-protein interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Inferring domain-domain interactions from protein-protein interactions

21 June 2018

1 reference

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Computational methods for the prediction of protein interactions

21 June 2018

1 reference

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Protein interactions: two methods for assessment of the reliability of high throughput observations

21 June 2018

1 reference

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Comparative assessment of large-scale data sets of protein-protein interactions

21 June 2018

1 reference

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Phosphotyrosine-binding domains in signal transduction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Subcellular localization of the yeast proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

MINT: a Molecular INTeraction database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

The PROSITE database, its status in 2002

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Multi-PDZ domain protein 1 (MUPP1) is concentrated at tight junctions through its possible interaction with claudin-1 and junctional adhesion molecule

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Lethality and centrality in protein networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

SH3 domains: complexity in moderation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

The protein-protein interaction map of Helicobacter pylori

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

BIND--The Biomolecular Interaction Network Database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Protein function in the post-genomic era.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

DIP: the database of interacting proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

From molecular to modular cell biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Prediction of protein-protein interactions using random decision forest framework.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Statistical analysis of domains in interacting protein pairs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Integrative approach for computationally inferring protein domain interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Global protein function prediction from protein-protein interaction networks

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Evolutionary traces of functional surfaces along G protein signaling pathway.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346601

Bridging structural biology and genomics: assessing protein interaction data with known complexes

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18281313

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN016

1 reference

25 July 2017

1 reference

25 July 2017

1 reference