(Q33326898)

English

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

8

object named as

Gloria M Coruzzi

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

7

object named as

Dennis Shasha

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

author name string

Karen E Thum

1

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Michael J Shin

2

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Rodrigo A Gutiérrez

3

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Indrani Mukherjee

4

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Manpreet S Katari

5

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Damion Nero

6

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

4 April 2008

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

BMC Systems Biology

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

31

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

describes a project that uses

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1752-0509-2-31

0 references

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Sugar sensing and signaling in plants: conserved and novel mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

The signal transducing photoreceptors of plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Regulation of gene expression by light.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Control of plant development and gene expression by sugar signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

The Biomolecular Interaction Network Database and related tools 2005 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

CARBOHYDRATE-MODULATED GENE EXPRESSION IN PLANTS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Genome-wide investigation of light and carbon signaling interactions in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

AraCyc: a biochemical pathway database for Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Light- and carbon-signaling pathways. Modeling circuits of interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Genetic approaches to understanding sugar-response pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Phytochromes control photomorphogenesis by differentially regulated, interacting signaling pathways in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Sugar sensing and signaling in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

The KEGG databases at GenomeNet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Multiple transcription-factor genes are early targets of phytochrome A signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Light: an indicator of time and place.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Antagonistic actions of Arabidopsis cryptochromes and phytochrome B in the regulation of floral induction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Overexpression of Arabidopsis phytochrome B inhibits phytochrome A function in the presence of sucrose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Reciprocal regulation of distinct asparagine synthetase genes by light and metabolites in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Light control of plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Characterization of human homologs of the Drosophila seven in absentia (sina) gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Sucrose control of phytochrome A signaling in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Light represses transcription of asparagine synthetase genes in photosynthetic and nonphotosynthetic organs of plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

21 June 2018

Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Sugar sensing and signalling networks in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Role of the Arabidopsis Glucose Sensor HXK1 in Nutrient, Light, and Hormonal Signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335094

31 October 2018

A web site for the computational analysis of yeast regulatory sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis mutants define downstream branches in the phototransduction pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Far-red light blocks greening of Arabidopsis seedlings via a phytochrome A-mediated change in plastid development

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Carbon and amino acids reciprocally modulate the expression of glutamine synthetase in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/18387196

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1752-0509-2-31

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

DBLP publication ID

journals/bmcsb/ThumSGMKNSC08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33326898&oldid=1740727094"