(Q33331032)

25 July 2017

title

Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment (English)

1 reference

25 July 2017

Bin Tian

5

0 references

author name string

Mugdha Khaladkar

1

1 reference

25 July 2017

Jianghui Liu

2

1 reference

25 July 2017

Dongrong Wen

3

1 reference

25 July 2017

Jason T L Wang

4

1 reference

25 July 2017

language of work or name

English

0 references

publication date

25 April 2008

1 reference

25 July 2017

1 reference

25 July 2017

volume

9

1 reference

25 July 2017

page(s)

189

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-189

25 July 2017

exact match

0 references

cites work

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

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Hairpin structure within the 3'UTR of DNA polymerase beta mRNA acts as a post-transcriptional regulatory element and interacts with Hax-1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Considerations in the identification of functional RNA structural elements in genomic alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Prediction of human microRNA targets

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

The role of iron regulatory proteins in mammalian iron homeostasis and disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

microRNA target predictions in animals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Identification and classification of conserved RNA secondary structures in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Understanding alternative splicing: towards a cellular code

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Metazoan replication-dependent histone mRNAs: a distinct set of RNA polymerase II transcripts

21 June 2018

1 reference

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A method for aligning RNA secondary structures and its application to RNA motif detection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Bringing the role of mRNA decay in the control of gene expression into focus

21 June 2018

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

21 June 2018

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The power of the 3' UTR: translational control and development

21 June 2018

1 reference

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21 June 2018

1 reference

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Regulation of mRNA translation by 5'- and 3'-UTR-binding factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Finding signals that regulate alternative splicing in the post-genomic era

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Untranslated regions of mRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

RefSeq and LocusLink: NCBI gene-centered resources

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2413145

Identification of secondary structure in the 5'-untranslated region of the human adrenomedullin mRNA with implications for the regulation of mRNA translation

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18439287

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Eukaryotic mRNPs may represent posttranscriptional operons

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18439287

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-189

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-189

release_vh3txhw4ibh2jnuuegnxzo4clq

9 September 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vh3txhw4ibh2jnuuegnxzo4clq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2413145

1 reference

25 July 2017

1 reference