(Q33340135)

English

'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus

scientific article

In more languages

default values for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

0 references

Lumbricus rubellus

object named as

Lumbricus rubellus

1 reference

based on heuristic

inferred from title

9

object named as

Peter Kille

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

object named as

Jacob G Bundy

1

0 references

author name string

Jasmin K Sidhu

2

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Faisal Rana

3

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

David J Spurgeon

4

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Claus Svendsen

5

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Jodie F Wren

6

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Stephen R Stürzenbaum

7

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

A John Morgan

8

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

3 June 2008

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

25

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

3 June 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Observing metabolic functions at the genome scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Consensus recommendations to promote and advance predictive systems toxicology and toxicogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Proteomics-based method for the assessment of marine pollution using liquid chromatography coupled with two-dimensional electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Proteomics as a route to identification of toxicity targets in environmental toxicology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabolic profiling of CSF: evidence that early intervention may impact on disease progression and outcome in schizophrenia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Toxicogenomics in regulatory ecotoxicology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Targeted profiling: quantitative analysis of 1H NMR metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabolic effects of dinoseb, diazinon and esfenvalerate in eyed eggs and alevins of Chinook salmon (Oncorhynchus tshawytscha) determined by 1H NMR metabolomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

From genomics to chemical genomics: new developments in KEGG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Proteomic evaluation of cadmium toxicity on the midge Chironomus riparius Meigen larvae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

The Consortium for Metabonomic Toxicology (COMET): aims, activities and achievements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Paradigm lost, paradigm found: the re-emergence of hormesis as a fundamental dose response model in the toxicological sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

An integrated functional genomics and metabolomics approach for defining poor prognosis in human neuroendocrine cancers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabonomics in toxicology: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Ecotoxicogenomics: linkages between exposure and effects in assessing risks of aquatic contaminants to fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Toxicogenomics and systems toxicology: aims and prospects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Surface-enhanced laser desorption/ionization-time of flight-mass spectrometry approach to biomarker discovery in blue mussels (Mytilus edulis) exposed to polyaromatic hydrocarbons and heavy metals under field conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabolic profiles to define the genome: can we hear the phenotypes?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

limmaGUI: a graphical user interface for linear modeling of microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Discrimination models using variance-stabilizing transformation of metabolomic NMR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabolomics by numbers: acquiring and understanding global metabolite data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

The isolation of N-phosphoryl-lombricine from earthworms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Phenotypic anchoring: linking cause and effect

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Deciphering metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Analytical reproducibility in (1)H NMR-based metabonomic urinalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

A comparison of cell and tissue extraction techniques using high-resolution 1H-NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Evaluation for Hsp70 as a biomarker of effect of pollutants on the earthworm Lumbricus terrestris

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Control genes in quantitative molecular biological techniques: the variability of invariance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Hormesis: U-shaped dose responses and their centrality in toxicology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Paradoxical effects of copper and manganese on brain mitochondrial function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Copper induces apoptosis in BA/F3beta cells: Bax, reactive oxygen species, and NFkappaB are involved

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Copper induces apoptosis in Aedes C6/36 cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Regulation of mitochondrial cytochrome b mRNA by copper in cultured human hepatoma cells and rat liver

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

DNA damage mediated by metal ions with special reference to copper and iron.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Drying increases intracellular partitioning of amphiphilic substances into the lipid phase. Impact On membrane permeability and significance for desiccation tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

High-resolution proton NMR studies of lymphocyte extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

21 June 2018

Molecular impact of propiconazole on Daphnia magna using a reproduction-related cDNA array

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Earthworm responses to Cd and Cu under fluctuating environmental conditions: a comparison with results from laboratory exposures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Copper increases the damage to DNA and proteins caused by reactive oxygen species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Environmental metabonomics: applying combination biomarker analysis in earthworms at a metal contaminated site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

PartiGene--constructing partial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Differential metallothionein expression in earthworm (Lumbricus rubellus) tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Isolation of lombricine and its enzymic phosphorylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Developing a new method for soil pollution monitoring using molecular genetic biomarkers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Metabonomic assessment of toxicity of 4-fluoroaniline, 3,5-difluoroaniline and 2-fluoro-4-methylaniline to the earthworm Eisenia veneta (Rosa): identification of new endogenous biomarkers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Systems Toxicology: Integrated Genomic, Proteomic and Metabonomic Analysis of Methapyrilene Induced Hepatotoxicity in the Rat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424032

31 October 2018

Biocomplexity: the post-genome challenge in ecotoxicology

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1H NMR spectroscopic investigations of tissue metabolite biomarker response to Cu II exposure in terrestrial invertebrates: identification of free histidine as a novel biomarker of exposure to copper in earthworms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct Sampling of Organisms from the Field and Knowledge of their Phenotype: Key Recommendations for Environmental Metabolomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-performance liquid chromatographic determination of lombricine and N-phosphoryl lombricine in the earthworm by pre-column fluorescence derivatisation with o-phthaldialdehyde-ethanethiol

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of cytosolic glutathione S-transferase activity from rat liver by copper

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histidine-rich glycoprotein from the hemolymph of the marine mussel Mytilus edulis L. binds Class A, Class B, and borderline metals

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toxicological, cellular and gene expression responses in earthworms exposed to copper and cadmium

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Earthworm species of the genus Eisenia can be phenotypically differentiated by metabolic profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic Profile Biomarkers of Metal Contamination in a Sentinel Terrestrial Species Are Applicable Across Multiple Sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18522721

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ecological genomics: making the leap from model systems in the lab to native populations in the field

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1890/1540-9295(2007)5%5B19:EGMTLF%5D2.0.CO;2

Identifiers

10.1186/1741-7007-6-25

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1741-7007-6-25

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33340135&oldid=2195260712"