(Q33347925)

English

Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

object named as

Inkyung Jung

1

0 references

author name string

Jaehyung Lee

2

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Soo-Young Lee

3

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Dongsup Kim

4

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

publication date

1 July 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

298

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Fast model-based protein homology detection without alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

bioNMF: a versatile tool for non-negative matrix factorization in biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

MUSTANG: a multiple structural alignment algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Sequence comparison and protein structure prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

LS-NMF: a modified non-negative matrix factorization algorithm utilizing uncertainty estimates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Discovering semantic features in the literature: a foundation for building functional associations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

The PROSITE database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Fold recognition by combining profile-profile alignment and support vector machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Protein homology detection by HMM-HMM comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

A comparison of scoring functions for protein sequence profile alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

The ASTRAL Compendium in 2004

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

PROSPECT II: protein structure prediction program for genome-scale applications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Enhanced genome annotation using structural profiles in the program 3D-PSSM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Comparison of sequence profiles. Strategies for structural predictions using sequence information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Learning the parts of objects by non-negative matrix factorization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Predicting protein structure using only sequence information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

21 June 2018

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Profile-based direct kernels for remote homology detection and fold recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

SPARKS 2 and SP3 servers in CASP6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Semi-supervised protein classification using cluster kernels.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Protein homology detection using string alignment kernels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Efficient remote homology detection using local structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Picasso: generating a covering set of protein family profiles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

Protein threading using PROSPECT: design and evaluation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2459191

31 October 2018

A discriminative framework for detecting remote protein homologies

1 reference

https://pubmed.ncbi.nlm.nih.gov/18590572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance

1 reference

https://pubmed.ncbi.nlm.nih.gov/18590572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Remote homolog detection using local sequence-structure correlations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18590572

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-9-298

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

DBLP publication ID

journals/bmcbi/JungLLK08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

0 references

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