(Q33350201)

26 July 2017

Phylogenetic detection of recombination with a Bayesian prior on the distance between trees (English)

1 reference

Leonardo de Oliveira Martins

26 July 2017

1 reference

object named as

Leonardo de Oliveira Martins

series ordinal

1

0 references

Elcio Leal

object named as

Elcio Leal

series ordinal

2

0 references

author name string

Hirohisa Kishino

series ordinal

3

1 reference

PubMed ID

18612422

26 July 2017

language of work or name

English

0 references

publication date

9 July 2008

1 reference

26 July 2017

1 reference

26 July 2017

3

1 reference

26 July 2017

7

1 reference

26 July 2017

e2651

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

9 July 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Avoidance of protein fold disruption in natural virus recombinants

21 June 2018

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Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes

21 June 2018

1 reference

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cBrother: relaxing parental tree assumptions for Bayesian recombination detection

21 June 2018

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Detecting recombination in evolving nucleotide sequences

21 June 2018

1 reference

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Relaxed phylogenetics and dating with confidence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Phylogenetic identification of lateral genetic transfer events

21 June 2018

1 reference

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Highways of gene sharing in prokaryotes

21 June 2018

1 reference

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The cobweb of life revealed by genome-scale estimates of horizontal gene transfer

21 June 2018

1 reference

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Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement

21 June 2018

1 reference

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Stochastic models for horizontal gene transfer: taking a random walk through tree space

21 June 2018

1 reference

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Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots

21 June 2018

1 reference

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Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

21 June 2018

1 reference

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Neighbor-net: an agglomerative method for the construction of phylogenetic networks

21 June 2018

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

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A coalescent model of recombination hotspots

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

The evolutionary genomics of pathogen recombination

21 June 2018

1 reference

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Recombination in evolutionary genomics

21 June 2018

1 reference

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Divergence time and evolutionary rate estimation with multilocus data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Evaluation of methods for detecting recombination from DNA sequences: empirical data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

A coalescent-based method for detecting and estimating recombination from gene sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Two-locus sampling distributions and their application

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

MRBAYES: Bayesian inference of phylogenetic trees

21 June 2018

1 reference

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Probabilistic divergence measures for detecting interspecies recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Performance of a divergence time estimation method under a probabilistic model of rate evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Maximum likelihood estimation of recombination rates from population data.

21 June 2018

1 reference

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Estimation of population parameters and recombination rates from single nucleotide polymorphisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

A coalescent estimator of the population recombination rate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences

21 June 2018

1 reference

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Evolutionary trees from DNA sequences: A maximum likelihood approach

21 June 2018

1 reference

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The sampling distribution of linkage disequilibrium.

21 June 2018

1 reference

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The sampling distribution of linkage disequilibrium under an infinite allele model without selection.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

Reconstructing evolution of sequences subject to recombination using parsimony

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440540

A likelihood method for the detection of selection and recombination using nucleotide sequences.

21 June 2018

1 reference

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Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Inference from Iterative Simulation Using Multiple Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Constructing minimal ancestral recombination graphs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Reconstructing reticulate evolution in species-theory and practice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0002651

Detection of recombination in DNA multiple alignments with hidden Markov models

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18612422

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18612422

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0002651

1 reference

26 July 2017

0 references

1 reference

26 July 2017

1 reference

PubMed ID

18612422