(Q33357098)

English

High-throughput analysis of the protein sequence-stability landscape using a quantitative yeast surface two-hybrid system and fragment reconstitution

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

High-throughput analysis of the protein sequence-stability landscape using a quantitative yeast surface two-hybrid system and fragment reconstitution (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

3

object named as

Shohei Koide

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

author name string

Sanjib Dutta

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Akiko Koide

2

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

language of work or name

0 references

publication date

22 July 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

382

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

721-733

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

High-affinity single-domain binding proteins with a binary-code interface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Evolution of an interloop disulfide bond in high-affinity antibody mimics based on fibronectin type III domain and selected by yeast surface display: molecular convergence with single-domain camelid and shark antibodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Limitations of yeast surface display in engineering proteins of high thermostability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

High-affinity fragment complementation of a fibronectin type III domain and its application to stability enhancement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Evolutionary protein stabilization in comparison with computational design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Phage-display as a tool for quantifying protein stability determinants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Searching for folded proteins in vitro and in silico.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Selection of stably folded proteins by phage-display with proteolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Combinatorial approaches to protein stability and structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Affinity maturation of Fab antibody fragments by fluorescent-activated cell sorting of yeast-displayed libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Quantifying beta-sheet stability by phage display

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Directed evolution of high-affinity antibody mimics using mRNA display

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Fragment complementation studies of protein stabilization by hydrophobic core residues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Yeast surface display for directed evolution of protein expression, affinity, and stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Rapid mapping of protein functional epitopes by combinatorial alanine scanning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Selection for improved protein stability by phage display.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Evolutionarily conserved pathways of energetic connectivity in protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Combinatorial protein engineering by incremental truncation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

The fibronectin type III domain as a scaffold for novel binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Selecting proteins with improved stability by a phage-based method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Increasing the secretory capacity of Saccharomyces cerevisiae for production of single-chain antibody fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

SMART, a simple modular architecture research tool: identification of signaling domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

The sequences of small proteins are not extensively optimized for rapid folding by natural selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

CATH--a hierarchic classification of protein domain structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Monitoring protein-protein interactions in intact eukaryotic cells by beta-galactosidase complementation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Yeast surface display for screening combinatorial polypeptide libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

In vitro evolution of thermodynamically stable turns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Generation of a family of protein fragments for structure-folding studies. 1. Folding complementation of two fragments of chymotrypsin inhibitor-2 formed by cleavage at its unique methionine residue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Split ubiquitin as a sensor of protein interactions in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Sequences That Regulate the Divergent GAL1-GAL10 Promoter in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Characterization by in vitro complementation of a peptide corresponding to an operator-proximal segment of the β-galactosidase structural gene of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Probing the determinants of protein folding and stability with amino acid substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Dramatic thermostabilization of yeast iso-1-cytochrome c by an asparagine----isoleucine replacement at position 57.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Multifunctional yeast high-copy-number shuttle vectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Functional assembly of a randomly cleaved protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

The three-dimensional structure of the tenth type III module of fibronectin: an insight into RGD-mediated interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

The beta bulge: a common small unit of nonrepetitive protein structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

21 June 2018

Development of novel yeast cell surface display system for homo-oligomeric protein by coexpression of native and anchored subunits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Stabilization of a fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Solution conformation and amyloid-like fibril formation of a polar peptide derived from a beta-hairpin in the OspA single-layer beta-sheet.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Yeast polypeptide fusion surface display levels predict thermal stability and soluble secretion efficiency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Protein folding stability can determine the efficiency of escape from endoplasmic reticulum quality control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613574

31 October 2018

Two proteins with the same structure respond very differently to mutation: the role of plasticity in protein stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Backbone dynamics of homologous fibronectin type III cell adhesion domains from fibronectin and tenascin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multistep denaturation of Borrelia burgdorferi OspA, a protein containing a single-layer beta-sheet

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the stabilization of ribonuclease S-protein by ribonuclease S-peptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative packing arrangements in the hydrophobic core of λrepresser

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissection of an enzyme by protein engineering. The N and C-terminal fragments of barnase form a native-like complex with restored enzymic activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein design by binary patterning of polar and nonpolar amino acids

1 reference

https://pubmed.ncbi.nlm.nih.gov/18674545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2008.07.036

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33357098&oldid=1536656390"