(Q33369599)

26 July 2017

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies (English)

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26 July 2017

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Lisa J Croner

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Nan Mei

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Nan Mei

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Weida Tong

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26 July 2017

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Leming Shi

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26 July 2017

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26 July 2017

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Huixiao Hong

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26 July 2017

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James C Fuscoe

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26 July 2017

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Wenjun Bao

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26 July 2017

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Richard Shippy

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26 July 2017

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Janet A Warrington

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26 July 2017

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Ernest S Kawasaki

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26 July 2017

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Yuling Luo

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26 July 2017

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Yongming Andrew Sun

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26 July 2017

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James C Willey

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26 July 2017

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Felix W Frueh

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26 July 2017

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Damir Herman

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26 July 2017

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Shashi Amur

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26 July 2017

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Vincent Bertholet

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26 July 2017

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Cecilie Boysen

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26 July 2017

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Xiaoxi Megan Cao

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26 July 2017

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Yaron Turpaz

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26 July 2017

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Federico M Goodsaid

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26 July 2017

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Brett Thorn

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26 July 2017

Roderick V Jensen

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26 July 2017

Stephen C Harris

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26 July 2017

Roger G Perkins

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Lei Guo

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26 July 2017

Hong Fang

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26 July 2017

Feng Qian

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26 July 2017

Catalin C Barbacioru

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26 July 2017

Tzu-Ming Chu

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26 July 2017

Patrick J Collins

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26 July 2017

Xiao-Hui Fan

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26 July 2017

Xu Guo

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26 July 2017

Jing Han

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Quan-Zhen Li

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Yunqing Ma

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26 July 2017

Ron L Peterson

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Raj K Puri

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Zhenqiang Su

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26 July 2017

Hongmei Sun

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26 July 2017

Charles Wang

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Sue Jane Wang

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26 July 2017

Jie Wu

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26 July 2017

Qian Xie

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26 July 2017

Liang Zhang

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Lu Zhang

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26 July 2017

Sheng Zhong

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26 July 2017

Russell D Wolfinger

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26 July 2017

12 August 2008

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26 July 2017

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26 July 2017

9 Suppl 9

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26 July 2017

S10

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Creative Commons Attribution 2.0 Generic

26 July 2017

start time

1 August 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-s9-s10

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cites work

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential

1 reference

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Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

21 June 2018

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Rat toxicogenomic study reveals analytical consistency across microarray platforms

21 June 2018

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Genomics. Microarray data reproduced, but some concerns remain

21 June 2018

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Using RNA sample titrations to assess microarray platform performance and normalization techniques

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarrays: quality control

21 June 2018

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Selection of differentially expressed genes in microarray data analysis.

21 June 2018

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Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays

21 June 2018

1 reference

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Comparison of various statistical methods for identifying differential gene expression in replicated microarray data

21 June 2018

1 reference

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Analysis of gene expression in pathophysiological states: balancing false discovery and false negative rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarray data analysis: from disarray to consolidation and consensus

21 June 2018

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Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Gene expression in giant cell myocarditis: Altered expression of immune response genes

21 June 2018

1 reference

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Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data

21 June 2018

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Improved statistical tests for differential gene expression by shrinking variance components estimates.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Empirical evaluation of data transformations and ranking statistics for microarray analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Outcome signature genes in breast cancer: is there a unique set?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Evaluation of gene expression measurements from commercial microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Spotted long oligonucleotide arrays for human gene expression analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

A stem cell molecular signature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

"Stemness": transcriptional profiling of embryonic and adult stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

The gene expression fingerprint of human heart failure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarray data analysis: a practical approach for selecting differentially expressed genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Significance analysis of microarrays applied to the ionizing radiation response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarray expression profiling identifies genes with altered expression in HDL-deficient mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Functional discovery via a compendium of expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Expression monitoring by hybridization to high-density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Evaluation of DNA microarray results with quantitative gene expression platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarray reality checks in the context of a complex disease

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Genome-wide analysis of spatial gene expression in Arabidopsis flowers.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Expression profiling--best practices for data generation and interpretation in clinical trials.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Multiple-laboratory comparison of microarray platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

31 October 2018

1 reference

12 December 2020

Statistical methods and microarray data

1 reference

12 December 2020

Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

1 reference

12 December 2020

Getting the noise out of gene arrays

1 reference

12 December 2020

Prediction of cancer outcome with microarrays: a multiple random validation strategy

1 reference

12 December 2020

Experimental design for gene expression microarrays

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12 December 2020

Microarrays and molecular research: noise discovery?

1 reference

12 December 2020

10.1186/1471-2105-9-S9-S10

Identifiers

DOI

1 reference

journals/bmcbi/ShiJJHPGGCBFQABBBCCCFF08

26 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 July 2017

1 reference