(Q33377255)

26 July 2017

title

Flanking p10 contribution and sequence bias in matrix based epitope prediction: revisiting the assumption of independent binding pockets (English)

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26 July 2017

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Christian S Parry

1

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26 July 2017

publication date

16 October 2008

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26 July 2017

published in

BMC Structural Biology

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26 July 2017

volume

8

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26 July 2017

page(s)

44

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Prediction of T-cell epitope

26 July 2017

cites work

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21 June 2018

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Crystallographic analysis of endogenous peptides associated with HLA-DR1 suggests a common, polyproline II-like conformation for bound peptides

21 June 2018

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21 June 2018

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Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

21 June 2018

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Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning

21 June 2018

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Supermotifs enable natural invariant chain-derived peptides to interact with many major histocompatibility complex-class II molecules

21 June 2018

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The three-dimensional structure of peptide-MHC complexes

21 June 2018

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21 June 2018

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Structure of the human class I histocompatibility antigen, HLA-A2

21 June 2018

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Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis

21 June 2018

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Specificity pockets for the side chains of peptide antigens in HLA-Aw68

21 June 2018

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The human platelet alloantigens, PlA1 and PlA2, are associated with a leucine33/proline33 amino acid polymorphism in membrane glycoprotein IIIa, and are distinguishable by DNA typing

21 June 2018

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The relation between major histocompatibility complex (MHC) restriction and the capacity of Ia to bind immunogenic peptides

21 June 2018

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Influence of proline residues on protein conformation

21 June 2018

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Truncation analysis of several DR binding epitopes

21 June 2018

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Identification of a motif for HLA-DR1 binding peptides using M13 display libraries

21 June 2018

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Energetics and cooperativity of the hydrogen bonding and anchor interactions that bind peptides to MHC class II protein

21 June 2018

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Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

31 October 2018

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Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

31 October 2018

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Identification of HLA DR7-restricted epitopes from human telomerase reverse transcriptase recognized by CD4+ T-helper cells

31 October 2018

1 reference

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C-terminal anchoring of a peptide to class II MHC via the P10 residue is compatible with a peptide bulge

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2600787

Cutting edge: a single, essential hydrogen bond controls the stability of peptide-MHC class II complexes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2600787

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2600787

Structural characteristics of an antigen required for its interaction with Ia and recognition by T cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2600787

The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens

31 October 2018

1 reference

12 December 2020

Exact prediction of a natural T cell epitope

1 reference

12 December 2020

A polymorphic pocket at the P10 position contributes to peptide binding specificity in class II MHC proteins

1 reference

12 December 2020

HLA-DR binding analysis of peptides from islet antigens in IDDM

1 reference

12 December 2020

Identifiers

DOI

10.1186/1472-6807-8-44

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Dimensions Publication ID

26 July 2017

0 references

1 reference

26 July 2017

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