(Q33395836)

26 July 2017

0 references

Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages (English)

1 reference

26 July 2017

1 reference

Anna Raffaello

3

0 references

Enrica Calura

object named as

Enrica Calura

1

1 reference

ORCID Public Data File 2021

author name string

Stefano Cagnin

2

1 reference

26 July 2017

Paolo Laveder

4

1 reference

26 July 2017

Gerolamo Lanfranchi

5

1 reference

26 July 2017

Chiara Romualdi

6

1 reference

26 July 2017

language of work or name

English

0 references

publication date

23 December 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

9

1 reference

26 July 2017

page(s)

630

1 reference

describes a project that uses

26 July 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Long-term enhancement of skeletal muscle mass and strength by single gene administration of myostatin inhibitors

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FoxO3 coordinately activates protein degradation by the autophagic/lysosomal and proteasomal pathways in atrophying muscle cells

14 July 2018

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FoxO3 controls autophagy in skeletal muscle in vivo

14 July 2018

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14 July 2018

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New Myc-anisms for DNA replication and tumorigenesis?

14 July 2018

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Caveolin-1(-/-)- and caveolin-2(-/-)-deficient mice both display numerous skeletal muscle abnormalities, with tubular aggregate formation

14 July 2018

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Rapid disuse and denervation atrophy involve transcriptional changes similar to those of muscle wasting during systemic diseases

14 July 2018

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Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

14 July 2018

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PGC-1alpha protects skeletal muscle from atrophy by suppressing FoxO3 action and atrophy-specific gene transcription

14 July 2018

1 reference

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Hypertrophic growth in cardiac myocytes is mediated by Myc through a Cyclin D2-dependent pathway

14 July 2018

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14 July 2018

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DeltaEF1 mediates TGF-beta signaling in vascular smooth muscle cell differentiation

14 July 2018

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Pro-metastasis function of TGFbeta mediated by the Smad pathway

14 July 2018

1 reference

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FOXO transcription factors cooperate with delta EF1 to activate growth suppressive genes in B lymphocytes

14 July 2018

1 reference

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Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

14 July 2018

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MIDAW: a web tool for statistical analysis of microarray data

14 July 2018

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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

14 July 2018

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oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

14 July 2018

1 reference

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Integrative analysis of the cancer transcriptome

14 July 2018

1 reference

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Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

14 July 2018

1 reference

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Functions of myc:max in the control of cell proliferation and tumorigenesis

14 July 2018

1 reference

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Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

14 July 2018

1 reference

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The IGF-1/PI3K/Akt pathway prevents expression of muscle atrophy-induced ubiquitin ligases by inhibiting FOXO transcription factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Foxo transcription factors induce the atrophy-related ubiquitin ligase atrogin-1 and cause skeletal muscle atrophy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Integration of Smad and forkhead pathways in the control of neuroepithelial and glioblastoma cell proliferation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Multiple types of skeletal muscle atrophy involve a common program of changes in gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Cytoscape: a software environment for integrated models of biomolecular interaction networks

14 July 2018

1 reference

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A role for Arf1 in mitotic Golgi disassembly, chromosome segregation, and cytokinesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Development of human protein reference database as an initial platform for approaching systems biology in humans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Identifying biological themes within lists of genes with EASE

14 July 2018

1 reference

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Insulin's expanding control of forkheads

14 July 2018

1 reference

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Statistical significance for genomewide studies

14 July 2018

1 reference

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Gene expression profile of aging in human muscle

14 July 2018

1 reference

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TM4: a free, open-source system for microarray data management and analysis

14 July 2018

1 reference

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Summaries of Affymetrix GeneChip probe level data

14 July 2018

1 reference

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Signalling pathways that mediate skeletal muscle hypertrophy and atrophy

14 July 2018

1 reference

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BIND: the Biomolecular Interaction Network Database

14 July 2018

1 reference

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Patterns of gene expression in atrophying skeletal muscles: response to food deprivation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

The mammalian Golgi--complex debates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

E2F4/5 and p107 as Smad cofactors linking the TGFbeta receptor to c-myc repression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Activation of an alternative NF-kappaB pathway in skeletal muscle during disuse atrophy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Control of Ser2448 phosphorylation in the mammalian target of rapamycin by insulin and skeletal muscle load

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Akt/mTOR pathway is a crucial regulator of skeletal muscle hypertrophy and can prevent muscle atrophy in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Mediation of IGF-1-induced skeletal myotube hypertrophy by PI(3)K/Akt/mTOR and PI(3)K/Akt/GSK3 pathways.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Identification of ubiquitin ligases required for skeletal muscle atrophy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

What do we really know about the ubiquitin-proteasome pathway in muscle atrophy?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Treatment of spinal muscular atrophy by sodium butyrate

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

NF-kappaB mediates the protein loss induced by TNF-alpha in differentiated skeletal muscle myotubes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Myonuclear domains in muscle adaptation and disease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

IGF-1 induces skeletal myocyte hypertrophy through calcineurin in association with GATA-2 and NF-ATc1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Smads bind directly to the Jun family of AP-1 transcription factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Akt promotes cell survival by phosphorylating and inhibiting a Forkhead transcription factor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Amino acid sufficiency and mTOR regulate p70 S6 kinase and eIF-4E BP1 through a common effector mechanism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Molecular definition of an allelic series of mutations disrupting the myostatin function and causing double-muscling in cattle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

The Rho family G proteins play a critical role in muscle differentiation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

RAFT1 phosphorylation of the translational regulators p70 S6 kinase and 4E-BP1

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Double muscling in cattle due to mutations in the myostatin gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Mutations in myostatin (GDF8) in double-muscled Belgian Blue and Piedmontese cattle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Mechanisms of muscle wasting. The role of the ubiquitin-proteasome pathway

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Coordinate activation of lysosomal, Ca 2+-activated and ATP-ubiquitin-dependent proteinases in the unweighted rat soleus muscle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

14 July 2018

Organelle inheritance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Protein kinases. 4. Protein kinase CK2: an enzyme with multiple substrates and a puzzling regulation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Changes in architecture of the Golgi complex and other subcellular organelles during myogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Web-based GeneChip analysis system for large-scale collaborative projects

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Myostatin induces cachexia by activating the ubiquitin proteolytic system through an NF-kappaB-independent, FoxO1-dependent mechanism.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

How muscles recover from paresis and atrophy after intramuscular injection of botulinum toxin A: Study in juvenile rats.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Persistent and improved functional gain in mdx dystrophic mice after treatment with L-arginine and deflazacort

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

The AP-1/CJUN signaling cascade is involved in muscle differentiation: implications in muscle wasting during cancer cachexia.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Comparison of gene expression of 2-mo denervated, 2-mo stimulated-denervated, and control rat skeletal muscles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Intermittent prednisone therapy in Duchenne muscular dystrophy: a randomized controlled trial

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Glucocorticoid treatment alleviates dystrophic myofiber pathology by activation of the calcineurin/NF-AT pathway.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

IGF-I stimulates muscle growth by suppressing protein breakdown and expression of atrophy-related ubiquitin ligases, atrogin-1 and MuRF1.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

RACK1 is an insulin-like growth factor 1 (IGF-1) receptor-interacting protein that can regulate IGF-1-mediated Akt activation and protection from cell death

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

A muscle precursor cell-dependent pathway contributes to muscle growth after atrophy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Space shuttle flight (STS-90) enhances degradation of rat myosin heavy chain in association with activation of ubiquitin-proteasome pathway

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Differential and prolonged expression of Fos-lacZ and Jun-lacZ in neurons, glia, and muscle following sciatic nerve damage.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Mammalian target of rapamycin is a direct target for protein kinase B: identification of a convergence point for opposing effects of insulin and amino-acid deficiency on protein translation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642825

Importance of the ATP-ubiquitin-proteasome pathway in the degradation of soluble and myofibrillar proteins in rabbit muscle extracts

31 October 2018

1 reference

12 December 2020

Simultaneous 31P MRS of the soleus and gastrocnemius in Sherpas during graded calf muscle exercise

1 reference

12 December 2020

p21 binding to PCNA causes G1 and G2 cell cycle arrest in p53-deficient cells

1 reference

12 December 2020

Muscle protein breakdown and the critical role of the ubiquitin-proteasome pathway in normal and disease states

1 reference

12 December 2020

Denervation-induced alterations in gene expression in mouse skeletal muscle

1 reference

12 December 2020

Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling

1 reference

12 December 2020

Gene profiling of skeletal muscle in an amyotrophic lateral sclerosis mouse model

1 reference

12 December 2020

The transcription factors NF-kappab and AP-1 are differentially regulated in skeletal muscle during sepsis

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-9-630

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-630

9 September 2019

1 reference

26 July 2017

1 reference