(Q33396755)

26 July 2017

title

OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes (English)

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26 July 2017

David Thybert

1

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author name string

Stéphane Avner

2

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26 July 2017

Céline Lucchetti-Miganeh

3

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26 July 2017

Angélique Chéron

4

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26 July 2017

Frédérique Barloy-Hubler

5

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26 July 2017

language of work or name

English

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publication date

31 December 2008

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26 July 2017

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26 July 2017

volume

9

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26 July 2017

page(s)

637

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Peroxiredoxins in bacterial antioxidant defense.

26 July 2017

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Probing the structure and bifunctionality of catalase-peroxidase (KatG).

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Crystal structure of nickel-containing superoxide dismutase reveals another type of active site

14 July 2018

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Diversity of structures and properties among catalases

14 July 2018

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Protein sulfenic acids in redox signaling.

14 July 2018

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Enzyme-specific profiles for genome annotation: PRIAM

14 July 2018

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14 July 2018

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Automated annotation of microbial proteomes in SWISS-PROT.

14 July 2018

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14 July 2018

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PROSITE: a documented database using patterns and profiles as motif descriptors

14 July 2018

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Differential expression and localization of Mn and Fe superoxide dismutases in the heterocystous cyanobacterium Anabaena sp. strain PCC 7120.

14 July 2018

1 reference

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Site-specific OH attack to the sugar moiety of DNA: a comparison of experimental data and computational simulation

14 July 2018

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The PROSITE database, its status in 2002

14 July 2018

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Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Oxidative stress in bacteria and protein damage by reactive oxygen species.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

New functions for the ancient globin family: bacterial responses to nitric oxide and nitrosative stress

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Increased coverage of protein families with the blocks database servers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

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14 July 2018

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14 July 2018

1 reference

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Profile hidden Markov models

14 July 2018

1 reference

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SMART, a simple modular architecture research tool: identification of signaling domains

14 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

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Sinorhizobium medicae sp. nov., isolated from annual Medicago spp.

14 July 2018

1 reference

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Tyrosyl radical generated by myeloperoxidase catalyzes the oxidative cross-linking of proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Oxidation of free amino acids and amino acid residues in proteins by radiolysis and by metal-catalyzed reactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Characterization of a manganese-containing catalase from the obligate thermophile Thermoleophilum album.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Rapid and sensitive protein similarity searches

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Regulation of intracellular protein turnover: covalent modification as a mechanism of marking proteins for degradation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Phylogenetic distribution of glutathione peroxidase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Rubrerythrin and peroxiredoxin: two novel putative peroxidases in the hydrogenosomes of the microaerophilic protozoon Trichomonas vaginalis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

How incorrect annotations evolve--the case of short ORFs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

The regulation and role of the periplasmic copper, zinc superoxide dismutase of Escherichia coli.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2631583

Significance of protein sequence similarities

31 October 2018

1 reference

12 December 2020

Superoxide reductase as a unique defense system against superoxide stress in the microaerophile Treponema pallidum

1 reference

12 December 2020

Bacterial haloperoxidases and their role in secondary metabolism

1 reference

12 December 2020

The flavohemoglobin of Escherichia coli confers resistance to a nitrosating agent, a "Nitric oxide Releaser," and paraquat and is essential for transcriptional responses to oxidative stress

1 reference

12 December 2020

Oxygen radical-induced single-strand DNA breaks and repair of the damage in a cell-free system

1 reference

12 December 2020

Reduction of nitric oxide in bacterial nitric oxide reductase--a theoretical model study

1 reference

12 December 2020

The brown alga Ascophyllum nodosum contains two different vanadium bromoperoxidases

1 reference

12 December 2020

NADH peroxidase activity of rubrerythrin

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-9-637

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-637

9 September 2019

1 reference

26 July 2017

1 reference