(Q33398330)

26 July 2017

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses (English)

1 reference

26 July 2017

1 reference

2

Michael S Robeson

1 reference

26 July 2017

Rob Knight

5

0 references

Noah Fierer

object named as

Noah Fierer

6

0 references

author name string

Ryan T Jones

1

1 reference

26 July 2017

Christian L Lauber

3

1 reference

26 July 2017

Micah Hamady

4

1 reference

26 July 2017

8 January 2009

1 reference

26 July 2017

1 reference

26 July 2017

3

1 reference

26 July 2017

442-453

1 reference

26 July 2017

4

1 reference

describes a project that uses

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2008.127

0 references

cites work

Acidiphilium aminolytica sp. nov.: An acidophilic chemoorganotrophic bacterium isolated from acidic mineral environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Species divergence and the measurement of microbial diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Microbial community succession and bacterial diversity in soils during 77,000 years of ecosystem development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Bacterial community structure of acid-impacted lakes: what controls diversity?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Environmental controls on the landscape-scale biogeography of stream bacterial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

The importance of culturing bacterioplankton in the 'omics' age.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Phylogenetic ecology of the freshwater Actinobacteria acI lineage

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Toward an ecological classification of soil bacteria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Microbial community succession in an unvegetated, recently deglaciated soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Is microbial community composition in boreal forest soils determined by pH, C-to-N ratio, the trees, or all three?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

The diversity and biogeography of soil bacterial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

UniFrac: a new phylogenetic method for comparing microbial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

New strategies for cultivation and detection of previously uncultured microbes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

ARB: a software environment for sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Laboratory cultivation of widespread and previously uncultured soil bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

SAR11 clade dominates ocean surface bacterioplankton communities.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Regulation of cytoplasmic pH in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Genetic diversity in Sargasso Sea bacterioplankton

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Short pyrosequencing reads suffice for accurate microbial community analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH-dependent.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mapping.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Accommodating phylogenetic uncertainty in evolutionary studies.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997719

Spatial distribution of 16S rRNA levels from uncultured acidobacteria in soil

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19129864

12 December 2020

inferred from PubMed ID database lookup

Phylogenies and the Comparative Method

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Phylogenetic position of the menaquinone-containing acidophilic chemo-organotrophAcidobacterium capsulatum

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Phylogenies and Community Ecology

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Environmental controls on bacterial tetraether membrane lipid distribution in soils

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.127

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2008.127

1 reference

Dimensions Publication ID

26 July 2017

0 references

1 reference

26 July 2017

1 reference