(Q33400858)

English

Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

26 July 2017

Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis (English)

1 reference

Europe PubMed Central

26 July 2017

computational biology

1 reference

based on heuristic

inferred from title

gene duplication

1 reference

based on heuristic

inferred from title

protein-protein interaction

1 reference

based on heuristic

inferred from title

Viktoria Dorfer

object named as

Viktoria Dorfer

3

1 reference

ORCID Public Data File 2021

author name string

Christian Frech

1

1 reference

Europe PubMed Central

26 July 2017

Michael Kommenda

2

1 reference

Europe PubMed Central

26 July 2017

Thomas Kern

4

1 reference

Europe PubMed Central

26 July 2017

Helmut Hintner

5

1 reference

Europe PubMed Central

26 July 2017

Johann W Bauer

6

1 reference

Europe PubMed Central

26 July 2017

Kamil Onder

7

1 reference

Europe PubMed Central

26 July 2017

publication date

19 January 2009

1 reference

Europe PubMed Central

26 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

26 July 2017

10

1 reference

Europe PubMed Central

26 July 2017

21

1 reference

Europe PubMed Central

26 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

19 January 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-21

0 references

Evolution and dynamics of protein interactions and networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Extraction of protein interaction data: a comparative analysis of methods in use.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

The universal protein resource (UniProt)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Modeling protein network evolution under genome duplication and domain shuffling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

How complete are current yeast and human protein-interaction networks?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

MINT: the Molecular INTeraction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

A direct comparison of protein interaction confidence assignment schemes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Protein-protein interactions more conserved within species than across species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Choosing negative examples for the prediction of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

MPact: the MIPS protein interaction resource on yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Preferential attachment in the evolution of metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Discovering reliable protein interactions from high-throughput experimental data using network topology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Filtering high-throughput protein-protein interaction data using a combination of genomic features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Novel specificities emerge by stepwise duplication of functional modules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Computational verification of protein-protein interactions by orthologous co-expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Online predicted human interaction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

ADVICE: Automated Detection and Validation of Interaction by Co-Evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

IntAct: an open source molecular interaction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Development of human protein reference database as an initial platform for approaching systems biology in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Assessing experimentally derived interactions in a small world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

How reliable are experimental protein-protein interaction data?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Protein interactions: two methods for assessment of the reliability of high throughput observations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Relating whole-genome expression data with protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Protein--protein interaction maps: a lead towards cellular functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Evolution of function in protein superfamilies, from a structural perspective.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

BIND--The Biomolecular Interaction Network Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Protein interaction mapping in C. elegans using proteins involved in vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

How far divergent evolution goes in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

Evolution and tinkering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

21 June 2018

An assessment of the uses of homologous interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

A topological measurement for weighted protein interaction network.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Inferring functional information from domain co-evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Gene regulatory network growth by duplication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

A statistical framework for combining and interpreting proteomic datasets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Gaining confidence in high-throughput protein interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Construction of reliable protein–protein interaction networks with a new interaction generality measure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Assessment of the reliability of protein-protein interactions and protein function prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Is there a bias in proteome research?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2637843

31 October 2018

Preferential Attachment in the Protein Network Evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19152684

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bridging structural biology and genomics: assessing protein interaction data with known complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19152684

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolving protein interaction networks through gene duplication

1 reference

https://pubmed.ncbi.nlm.nih.gov/19152684

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-10-21

1 reference

Europe PubMed Central

26 July 2017

DBLP publication ID

journals/bmcbi/FrechKDKHBO09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33400858&oldid=1802984419"