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Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.
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scholarly article
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Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
title
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
main subject
bias
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inferred from title
author
Leila Taher
series ordinal
1
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Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
author name string
Ivan Ovcharenko
series ordinal
2
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Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
language of work or name
English
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publication date
25 January 2009
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Europe PubMed Central
PMC publication ID
2647827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
number of pages
7
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Bioinformatics
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Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
volume
25
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Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
issue
5
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stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
page(s)
578-584
1 reference
stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
cites work
KEGG for linking genomes to life and the environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
SNPtoGO: characterizing SNPs by enriched GO terms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
CONDOR: a database resource of developmentally associated conserved non-coding elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
In vivo enhancer analysis of human conserved non-coding sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Highly conserved non-coding sequences are associated with vertebrate development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Evolution and functional classification of vertebrate gene deserts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
GOToolBox: functional analysis of gene datasets based on Gene Ontology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Ultraconserved Elements in the Human Genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Scanning Human Gene Deserts for Long-Range Enhancers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Identification of Cis-regulatory Elements in the Mouse Pax9/Nkx2-9 Genomic Region: Implication for Evolutionary Conserved Synteny
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Predicting gene function from patterns of annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Initial sequencing and comparative analysis of the mouse genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Comparative DNA sequence analysis of mouse and human protocadherin gene clusters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
The cadherin superfamily: diversity in form and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Online Mendelian Inheritance in Man (OMIM) as a knowledgebase for human developmental disorders.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Gene ontology: tool for the unification of biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
28 July 2018
Widespread ultraconservation divergence in primates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Prediction of synergistic transcription factors by function conservation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
From genomics to chemical genomics: new developments in KEGG
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Conserved non-genic sequences - an unexpected feature of mammalian genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
The UCSC Genome Browser Database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Forebrain-specific promoter/enhancer D6 derived from the mouse Dach1 gene controls expression in neural stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Predicting gene function from gene expressions and ontologies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2647827
retrieved
31 October 2018
Interpreting mammalian evolution using Fugu genome comparisons
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19168912
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/BIOINFORMATICS/BTP043
1 reference
stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
PMC publication ID
2647827
1 reference
stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
PubMed publication ID
19168912
1 reference
stated in
Europe PubMed Central
PMC publication ID
2647827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19168912%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
ResearchGate publication ID
23939224
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