(Q33403657)

26 July 2017

Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance (English)

1 reference

26 July 2017

Makedonka Mitreva

6

0 references

Robin B. Gasser

object named as

Robin B Gasser

5

0 references

author name string

Zhengyuan Wang

1

1 reference

26 July 2017

John Martin

2

1 reference

26 July 2017

Sahar Abubucker

3

1 reference

26 July 2017

Yong Yin

4

1 reference

26 July 2017

28 January 2009

1 reference

26 July 2017

BMC Evolutionary Biology

1 reference

26 July 2017

9

1 reference

26 July 2017

23

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-23

26 July 2017

0 references

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21 June 2018

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21 June 2018

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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

21 June 2018

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On the Extent and Origins of Genic Novelty in the Phylum Nematoda

21 June 2018

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A new class of anthelmintics effective against drug-resistant nematodes

21 June 2018

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Enzyme improvement in the absence of structural knowledge: a novel statistical approach.

21 June 2018

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The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences

21 June 2018

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KEGG for linking genomes to life and the environment

21 June 2018

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Engineering cytochrome p450 enzymes

21 June 2018

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Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions.

21 June 2018

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Draft genome of the filarial nematode parasite Brugia malayi

21 June 2018

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Investigating protein structural plasticity by surveying the consequence of an amino acid deletion from TEM-1 beta-lactamase.

21 June 2018

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Control of parasitic disease using vaccines: an answer to drug resistance?

21 June 2018

1 reference

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Developing antiangiogenic peptide drugs for angiogenesis-related diseases

21 June 2018

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Relationship between insertion/deletion (indel) frequency of proteins and essentiality

21 June 2018

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Parasitic nematodes - from genomes to control.

21 June 2018

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Plant parasitic nematode proteins and the host parasite interaction

21 June 2018

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Enzymes and pharmacogenetics of cardiovascular drugs

21 June 2018

1 reference

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Long-term trends in evolution of indels in protein sequences

21 June 2018

1 reference

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Molecular biomimetics: utilizing nature's molecular ways in practical engineering

21 June 2018

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Indel-based targeting of essential proteins in human pathogens that have close host orthologue(s): discovery of selective inhibitors for Leishmania donovani elongation factor-1alpha

21 June 2018

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Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer

21 June 2018

1 reference

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Anthelmintic resistance in New Zealand: a perspective on recent findings and options for the future

21 June 2018

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Chemoattraction in Pristionchus nematodes and implications for insect recognition

21 June 2018

1 reference

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Deletion of microsomal prostaglandin E synthase-1 increases sensitivity to salt loading and angiotensin II infusion

21 June 2018

1 reference

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Directed evolution: an approach to engineer enzymes

21 June 2018

1 reference

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Why do hubs tend to be essential in protein networks?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Rapid evolution of reproductive proteins in abalone and Drosophila.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Rh proteins vs Amt proteins: an organismal and phylogenetic perspective on CO2 and NH3 gas channels

21 June 2018

1 reference

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Pfam: clans, web tools and services

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

The Universal Protein Resource (UniProt): an expanding universe of protein information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Molecular evolution of animal antimicrobial peptides: widespread moderate positive selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Structural basis for lipid-mediated interactions between mitochondrial ADP/ATP carrier monomers

21 June 2018

1 reference

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Evolutionary plasticity of protein families: coupling between sequence and structure variation

21 June 2018

1 reference

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Positive selection for indel substitutions in the rodent sperm protein catsper1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Enhancing catalytic promiscuity for biocatalysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Natural genetic variation caused by transposable elements in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Indel-based evolutionary distance and mouse-human divergence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Adaptive evolution and explosive speciation: the cichlid fish model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Characterization of evolutionary rates and constraints in three Mammalian genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Alignment of protein sequences by their profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Getting to the roots of parasitism by nematodes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Nematoda: genes, genomes and the evolution of parasitism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Insertion-deletion biases and the evolution of genome size

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Soil-transmitted helminth infections: updating the global picture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Positive selection on protein-length in the evolution of a primate sperm ion channel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

PANTHER: a library of protein families and subfamilies indexed by function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

DNA loss and evolution of genome size in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

An efficient algorithm for large-scale detection of protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Mining the melanosome for tumor vaccine targets: P.polypeptide is a novel tumor-associated antigen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Fold change in evolution of protein structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

HIV-1 integrase: the next target for AIDS therapy?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: evidence from ndhF sequences and morphology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

The consensus concept for thermostability engineering of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Mutations in the chloride channel gene CLCNKB as a cause of classic Bartter syndrome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Identification of potential vaccine and drug target candidates by expressed sequence tag analysis and immunoscreening of Onchocerca volvulus larval cDNA libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Characterization of plant nematode genes: identifying targets for a transgenic defence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Molecular analysis of nematode diversity and the evolution of parasitism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Cloning and characterization of an esophageal-gland-specific chorismate mutase from the phytoparasitic nematode Meloidogyne javanica

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

A molecular evolutionary framework for the phylum Nematoda

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

How amino-acid insertions are allowed in an alpha-helix of T4 lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Molecular genealogy of some nematode taxa as based on cytochrome c and globin amino acid sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Energy metabolisms of parasitic helminths: adaptations to parasitism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Slipped-strand mispairing: a major mechanism for DNA sequence evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

On the evolution of genome size of birds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

21 June 2018

Biochemical evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Design of drug-resistant alleles of type-III phosphatidylinositol 4-kinases using mutagenesis and molecular modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Divergence of genes encoding non-specific lipid transfer proteins in the poaceae family.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Safety and efficacy of the HIV-1 integrase inhibitor raltegravir (MK-0518) in treatment-experienced patients with multidrug-resistant virus: a phase II randomised controlled trial

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

The evolution of biased codon and amino acid usage in nematode genomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Evolutionary implications of the relationship between genome size and body size in flatworms and copepods

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Large-scale search for genes on which positive selection may operate.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

A transcriptomic analysis of the phylum Nematoda

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2644674

Distribution of Indel lengths

31 October 2018

1 reference

12 December 2020

Comparative genomics of nematodes

1 reference

12 December 2020

Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases

1 reference

12 December 2020

A novel mechanism generating short deletion/insertions following slippage is suggested by a mutation in the human alpha2-globin gene

1 reference

12 December 2020

Analysis of insertions/deletions in protein structures

1 reference

12 December 2020

Anthelmintic resistance: The state of play revisited

1 reference

12 December 2020

Tests for positive selection on immune and reproductive genes in closely related species of the murine genus mus

1 reference

12 December 2020

Selective constraints, amino acid composition, and the rate of protein evolution

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-9-23

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-23

9 September 2019

1 reference

26 July 2017

1 reference