(Q33437215)

26 July 2017

title

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences (English)

1 reference

species distribution model

26 July 2017

main subject

1 reference

1

Guy Baele

0 references

Stijn Vansteelandt

series ordinal

3

object named as

Stijn Vansteelandt

0 references

Yves Van de Peer

series ordinal

2

object named as

Yves Van de Peer

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publication date

30 April 2009

1 reference

26 July 2017

published in

BMC Evolutionary Biology

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26 July 2017

volume

9

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26 July 2017

page(s)

87

1 reference

Among-site rate variation and its impact on phylogenetic analyses

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

A general comparison of relaxed molecular clock models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Assessing site-interdependent phylogenetic models of sequence evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Should phylogenetic models be trying to "fit an elephant"?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

A new method for calculating evolutionary substitution rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Phylogenetic relations of humans and African apes from DNA sequences in the psi eta-globin region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Computing Bayes factors using thermodynamic integration.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Identification and measurement of neighbor-dependent nucleotide substitution processes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Phylogenetic estimation of context-dependent substitution rates by maximum likelihood

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

DNA sequence evolution with neighbor-dependent mutation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

A novel use of equilibrium frequencies in models of sequence evolution

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Cytosine deamination plays a primary role in the evolution of mammalian isochores

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Wide variations in neighbor-dependent substitution rates.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2695821

The influence of specific neighboring bases on substitution bias in noncoding regions of the plant chloroplast genome

31 October 2018

1 reference

12 December 2020

The influence of nearest neighbors on the rate and pattern of spontaneous point mutations

1 reference

12 December 2020

Estimating the pattern of nucleotide substitution

1 reference

12 December 2020

Neighboring base effects on substitution rates in pseudogenes

1 reference

12 December 2020

BEST-FIT MAXIMUM-LIKELIHOOD MODELS FOR PHYLOGENETIC INFERENCE: EMPIRICAL TESTS WITH KNOWN PHYLOGENIES.

1 reference

12 December 2020

The majority of methylated deoxycytidines in human DNA are not in the CpG dinucleotide

1 reference

12 December 2020

Correct and incorrect vertebrate phylogenies obtained by the entire mitochondrial DNA sequences

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-9-87

1 reference

Dimensions Publication ID

26 July 2017

0 references

1 reference

26 July 2017

1 reference