(Q33438918)

English

Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure

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scholarly article

1 reference

Europe PubMed Central

26 July 2017

Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure (English)

1 reference

Europe PubMed Central

26 July 2017

Federico M. Lauro

1

1 reference

Europe PubMed Central

26 July 2017

object named as

Nicola Vitulo

4

0 references

object named as

Giorgio Valle

5

0 references

Douglas H. Bartlett

object named as

Douglas H Bartlett

6

0 references

author name string

Khiem Tran

2

1 reference

Europe PubMed Central

26 July 2017

Alessandro Vezzi

3

1 reference

Europe PubMed Central

26 July 2017

language of work or name

0 references

publication date

21 December 2007

1 reference

Europe PubMed Central

26 July 2017

Journal of Bacteriology

1 reference

Europe PubMed Central

26 July 2017

190

1 reference

Europe PubMed Central

26 July 2017

1699-1709

1 reference

Europe PubMed Central

26 July 2017

5

1 reference

Europe PubMed Central

26 July 2017

Cold-adapted enzymes from marine Antarctic microorganisms.

1 reference

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21 June 2018

The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation

1 reference

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21 June 2018

Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria

1 reference

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21 June 2018

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

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21 June 2018

Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains

1 reference

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The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

1 reference

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ppGpp: a global regulator in Escherichia coli.

1 reference

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21 June 2018

Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis

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Fine-tuning of the Escherichia coli sigmaE envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti-sigma factor, RseA.

1 reference

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21 June 2018

Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure

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DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.

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21 June 2018

Improved prediction of signal peptides: SignalP 3.0

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21 June 2018

CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit

1 reference

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Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae

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21 June 2018

Recent developments in bacterial cold-shock response

1 reference

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21 June 2018

The effects of a tryptophan-histidine deficiency in a mutant of Escherichia coli

1 reference

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21 June 2018

Influence of growth temperature on lipid and phosphate contents of surface polysaccharides from the antarctic bacterium Pseudoalteromonas haloplanktis TAC 125.

1 reference

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21 June 2018

Pressure-Induced Differential Regulation of the Two Tryptophan Permeases Tat1 and Tat2 by Ubiquitin Ligase Rsp5 and Its Binding Proteins, Bul1 and Bul2

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Mutation in the relA gene of Vibrio cholerae affects in vitro and in vivo expression of virulence factors

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Pyruvate kinase: current status of regulatory and functional properties

1 reference

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21 June 2018

Low-temperature-induced changes in composition and fluidity of lipopolysaccharides in the antarctic psychrotrophic bacterium Pseudomonas syringae

1 reference

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Genetic analysis of pigment biosynthesis in Xanthobacter autotrophicus Py2 using a new, highly efficient transposon mutagenesis system that is functional in a wide variety of bacteria

1 reference

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21 June 2018

Pressure effects on in vivo microbial processes

1 reference

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21 June 2018

Regulation of the desaturation of fatty acids and its role in tolerance to cold and salt stress.

1 reference

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21 June 2018

Purification and biochemical characterization of Mycobacterium tuberculosis SuhB, an inositol monophosphatase involved in inositol biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Effects of replication termination mutants on chromosome partitioning in Bacillus subtilis

1 reference

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21 June 2018

Role of flm locus in mesophilic Aeromonas species adherence

1 reference

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21 June 2018

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

FabF is required for piezoregulation of cis-vaccenic acid levels and piezophilic growth of the deep-Sea bacterium Photobacterium profundum strain SS9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Regulation of cold shock-induced RNA helicase gene expression in the Cyanobacterium anabaena sp. strain PCC 7120.

1 reference

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21 June 2018

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Steps in the development of a Vibrio cholerae El Tor biofilm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

RecD function is required for high-pressure growth of a deep-sea bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Massive presence of the Escherichia coli 'major cold-shock protein' CspA under non-stress conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Evidence that rseC, a gene in the rpoE cluster, has a role in thiamine synthesis in Salmonella typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

The complete genome sequence of Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Factors responsible for target site selection in Tn10 transposition: a role for the DDE motif in target DNA capture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Increase in negative supercoiling of plasmid DNA in Escherichia coli exposed to cold shock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

An rpoE-like locus controls outer membrane protein synthesis and growth at cold temperatures and high pressures in the deep-sea bacterium Photobacterium sp. strain SS9.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Escherichia coli as a model for the regulation of dissociable (type II) fatty acid biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Vibrio cholerae Hcp, a secreted protein coregulated with HlyA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

The Cs sec mutants of Escherichia coli reflect the cold sensitivity of protein export itself

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Use of a reporter gene to follow high-pressure signal transduction in the deep-sea bacterium Photobacterium sp. strain SS9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Stress response of Escherichia coli to elevated hydrostatic pressure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Phosphorylation of lipopolysaccharides in the Antarctic psychrotroph Pseudomonas syringae: a possible role in temperature adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

SeqA: a negative modulator of replication initiation in E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

SeqA limits DnaA activity in replication from oriC in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

ompH gene expression is regulated by multiple environmental cues in addition to high pressure in the deep-sea bacterium Photobacterium species strain SS9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Studies on transformation of Escherichia coli with plasmids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Cytoplasmic l -Asparaginase: Isolation of a Defective Strain and Mapping of ansA

1 reference

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21 June 2018

Isolation and characterization of the recA gene of Rhizobium meliloti

1 reference

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21 June 2018

A study of the effects of hydrostatic pressure on macromolecular synthesis in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

The thermodynamics of protein stability. Cold destabilization as a general phenomenon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Characterization of the spoT gene of Escherichia coli

1 reference

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21 June 2018

Pressure-induced dissociation of tight couple ribosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

21 June 2018

Ribosomes as sensors of heat and cold shock in Escherichia coli

1 reference

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21 June 2018

Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria

1 reference

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21 June 2018

Function of a relaxed-like state following temperature downshifts in Escherichia coli

1 reference

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21 June 2018

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1 reference

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21 June 2018

Control of bacterial DNA supercoiling

1 reference

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Lambdoid phages that simplify the recovery of in vitro recombinants

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Sigma L is important for cold shock adaptation of Bacillus subtilis

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31 October 2018

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1 reference

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31 October 2018

Changes in Escherichia coli transcriptome during acclimatization at low temperature.

1 reference

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31 October 2018

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1 reference

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31 October 2018

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1 reference

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31 October 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

31 October 2018

Protein aggregation in Escherichia coli: role of proteases

1 reference

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31 October 2018

Support vector machine approach for protein subcellular localization prediction.

1 reference

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31 October 2018

Flagellin polymerisation control by a cytosolic export chaperone.

1 reference

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31 October 2018

Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii.

1 reference

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31 October 2018

The ATP-dependent Clp protease is essential for acclimation to UV-B and low temperature in the cyanobacterium Synechococcus.

1 reference

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31 October 2018

Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

31 October 2018

Modulation of the Escherichia coli sigmaE (RpoE) heat-shock transcription-factor activity by the RseA, RseB and RseC proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

31 October 2018

Lethal double-stranded RNA processing activity of ribonuclease III in the absence of suhB protein of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258685

31 October 2018

Adaptation of muscle pyruvate kinases to environmental temperatures and pressures

1 reference

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31 October 2018

Subunit dissociation and inactivation of pyruvate kinase by hydrostatic pressure oxidation of sulfhydryl groups and ligand effects on enzyme stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

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Conjugal vectors for cloning, expression, and insertional mutagenesis in gram-negative bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal components neighboring the 2475 loop in Escherichia coli 50S subunits

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Altered biological properties of cell membranes in Escherichia coli dnaA and seqA mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct replication requirements for the two Vibrio cholerae chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Induction, transcription and translation in Escherichia coli: a hydrostatic pressure study

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nucleoid-associated DNA-binding protein H-NS is required for the efficient adaptation of Escherichia coli K-12 to a cold environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional response reveals translation machinery as target for high pressure in Lactobacillus sanfranciscensis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18156275

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.01176-07

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

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