(Q33442693)

English

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms

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scholarly article

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Europe PubMed Central

26 July 2017

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms (English)

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Europe PubMed Central

26 July 2017

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26 July 2017

object named as

Gregory J Dick

7

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Brett J Baker

11

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Michael P Thelen

object named as

Michael P Thelen

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Robert L Hettich

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Loren Hauser

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26 July 2017

Jillian Banfield

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object named as

Jillian F Banfield

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26 July 2017

Vincent J Denef

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Vincent J Denef

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Steven W Singer

3

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Steven W Singer

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26 July 2017

Korin E Wheeler

9

object named as

Korin E Wheeler

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26 July 2017

author name string

Daniela S Aliaga Goltsman

1

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26 July 2017

Nathan C VerBerkmoes

4

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26 July 2017

Mark Lefsrud

5

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26 July 2017

Ryan S Mueller

6

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26 July 2017

Christine L Sun

8

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26 July 2017

Adam Zemla

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Manesh B Shah

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8 May 2009

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26 July 2017

Applied and Environmental Microbiology

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26 July 2017

75

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26 July 2017

4599-4615

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Europe PubMed Central

26 July 2017

13

1 reference

Europe PubMed Central

26 July 2017

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

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21 June 2018

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

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Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations

1 reference

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21 June 2018

Natural acidophilic biofilm communities reflect distinct organismal and functional organization

1 reference

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21 June 2018

Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation

1 reference

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21 June 2018

A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis

1 reference

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Virus population dynamics and acquired virus resistance in natural microbial communities

1 reference

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21 June 2018

Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community

1 reference

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21 June 2018

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21 June 2018

Microbial populations in acid mineral bioleaching systems of Tong Shankou Copper Mine, China

1 reference

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21 June 2018

Genetic exchange across a species boundary in the archaeal genus ferroplasma

1 reference

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21 June 2018

Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.

1 reference

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21 June 2018

Insights into the autotrophic CO2 fixation pathway of the archaeon Ignicoccus hospitalis: comprehensive analysis of the central carbon metabolism.

1 reference

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

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Analysis of environmental transcriptomes by DNA microarrays.

1 reference

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21 June 2018

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1 reference

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Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds.

1 reference

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1 reference

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Control of fatty acid desaturation: a mechanism conserved from bacteria to humans.

1 reference

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21 June 2018

A novel oxalosuccinate-forming enzyme involved in the reductive carboxylation of 2-oxoglutarate in Hydrogenobacter thermophilus TK-6.

1 reference

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21 June 2018

Diversity and biosynthesis of compatible solutes in hyper/thermophiles.

1 reference

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21 June 2018

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

1 reference

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21 June 2018

Symbiosis insights through metagenomic analysis of a microbial consortium

1 reference

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21 June 2018

Analysis of mercuric reductase (merA) gene diversity in an anaerobic mercury-contaminated sediment enrichment

1 reference

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21 June 2018

Role of CheB and CheR in the complex chemotactic and aerotactic pathway of Azospirillum brasilense

1 reference

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21 June 2018

The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.

1 reference

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Deciphering the evolution and metabolism of an anammox bacterium from a community genome

1 reference

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1 reference

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21 June 2018

Functional characterization of the Bradyrhizobium japonicum modA and modB genes involved in molybdenum transport.

1 reference

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21 June 2018

Evaluation of Leptospirillum ferrooxidans for Leaching

1 reference

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21 June 2018

Role of the precorrin 6-X reductase gene in cobamide biosynthesis in Methanococcus maripaludis

1 reference

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21 June 2018

Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community

1 reference

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21 June 2018

Group II intron retroelements: function and diversity

1 reference

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21 June 2018

The PIN-domain toxin-antitoxin array in mycobacteria

1 reference

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21 June 2018

AS2TS system for protein structure modeling and analysis

1 reference

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21 June 2018

Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

21 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

21 June 2018

PII signal transduction proteins: sensors of alpha-ketoglutarate that regulate nitrogen metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

21 June 2018

Diversifying carotenoid biosynthetic pathways by directed evolution

1 reference

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21 June 2018

Genomic insights that advance the species definition for prokaryotes

1 reference

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21 June 2018

The Icm/Dot type-IV secretion systems of Legionella pneumophila and Coxiella burnetii

1 reference

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21 June 2018

Metabolically active eukaryotic communities in extremely acidic mine drainage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

21 June 2018

Diversity in chemotaxis mechanisms among the bacteria and archaea.

1 reference

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21 June 2018

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21 June 2018

A novel enzyme, citryl-CoA synthetase, catalysing the first step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704813

21 June 2018

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1 reference

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21 June 2018

Metabolism of inorganic N compounds by ammonia-oxidizing bacteria

1 reference

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Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis

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New Bacterial Pathway for 4- and 5-Chlorosalicylate Degradation via 4-Chlorocatechol and Maleylacetate in Pseudomonas sp. Strain MT1

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Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation.

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21 June 2018

Informatics for unveiling hidden genome signatures

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DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

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Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

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Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems.

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21 June 2018

Cluster analysis and display of genome-wide expression patterns

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

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21 June 2018

Thermophilic bacilli have split cytochrome b genes for cytochrome b6 and subunit IV. First cloning of cytochrome b from a gram-positive bacterium (Bacillus stearothermophilus).

1 reference

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21 June 2018

Siroheme: A New Prosthetic Group Participating in Six-Electron Reduction Reactions Catalyzed by Both Sulfite and Nitrite Reductases

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21 June 2018

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21 June 2018

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31 October 2018

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1 reference

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31 October 2018

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

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31 October 2018

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31 October 2018

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31 October 2018

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31 October 2018

Molecular dynamics of the Shewanella oneidensis response to chromate stress.

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31 October 2018

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31 October 2018

Proteogenomic approaches for the molecular characterization of natural microbial communities

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31 October 2018

Community proteomics of a natural microbial biofilm

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31 October 2018

Formate and its role in hydrogen production in Escherichia coli

1 reference

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31 October 2018

A novel enzyme, citryl-CoA lyase, catalysing the second step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6.

1 reference

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31 October 2018

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31 October 2018

Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase

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31 October 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

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31 October 2018

Enzyme genomics: Application of general enzymatic screens to discover new enzymes

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31 October 2018

Effect of AmtB homologues on the post-translational regulation of nitrogenase activity in response to ammonium and energy signals in Rhodospirillum rubrum

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.02943-08

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

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