(Q33474603)

English

Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Acidithiobacillus ferrooxidans

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Raquel Quatrini

5

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

author name string

Pamela A Nieto

1

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Paulo C Covarrubias

2

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Eugenia Jedlicki

3

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

David S Holmes

4

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

publication date

25 June 2009

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

BMC Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

63

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

1 reference

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21 June 2018

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

1 reference

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Housekeeping genes for quantitative expression studies in the three-spined stickleback Gasterosteus aculeatus.

1 reference

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The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates

1 reference

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21 June 2018

Evaluation of reference genes for real-time RT-PCR expression studies in the plant pathogen Pectobacterium atrosepticum

1 reference

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Regulation of a glutamyl-tRNA synthetase by the heme status.

1 reference

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qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data

1 reference

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Analysis of differential-expressed proteins of Acidithiobacillus ferrooxidans grown under phosphate starvation

1 reference

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Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis

1 reference

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Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture

1 reference

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Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans

1 reference

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Real-time RT-PCR normalisation; strategies and considerations.

1 reference

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21 June 2018

Identification of putative sulfurtransferase genes in the extremophilic Acidithiobacillus ferrooxidans ATCC 23270 genome: structural and functional characterization of the proteins

1 reference

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21 June 2018

Determination of the core of a minimal bacterial gene set

1 reference

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21 June 2018

Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

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Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets

1 reference

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21 June 2018

Regulation of the expression of the Acidithiobacillus ferrooxidans rus operon encoding two cytochromes c, a cytochrome oxidase and rusticyanin.

1 reference

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Guideline to reference gene selection for quantitative real-time PCR

1 reference

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Molecular design and functional organization of the RecA protein

1 reference

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21 June 2018

The TIGRFAMs database of protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

21 June 2018

The divergent chromosomal ars operon of Acidithiobacillus ferrooxidans is regulated by an atypical ArsR protein

1 reference

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Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems.

1 reference

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21 June 2018

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

21 June 2018

Quantification using real-time PCR technology: applications and limitations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

21 June 2018

Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

21 June 2018

Regulation of ribosomal RNA synthesis in E. coli: effects of the global regulator guanosine tetraphosphate (ppGpp).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

21 June 2018

Characterization of the petI and res operons of Acidithiobacillus ferrooxidans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

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Quantification of expression of Staphylococcus epidermidis housekeeping genes with Taqman quantitative PCR during in vitro growth and under different conditions

1 reference

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Control genes in quantitative molecular biological techniques: the variability of invariance.

1 reference

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Artemis: sequence visualization and annotation

1 reference

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Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays

1 reference

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Molecular cloning, sequencing, and expression of omp-40, the gene coding for the major outer membrane protein from the acidophilic bacterium Thiobacillus ferrooxidans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2713239

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Characterization of an operon encoding two c-type cytochromes, an aa(3)-type cytochrome oxidase, and rusticyanin in Thiobacillus ferrooxidans ATCC 33020.

1 reference

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A novel method for real time quantitative RT-PCR.

1 reference

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Real time quantitative PCR

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19555508

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19555508

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2199-10-63

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

ResearchGate publication ID

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