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General rules for optimal codon choice
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
title
General rules for optimal codon choice
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
author
Dmitri A. Petrov
object named as
Dmitri A Petrov
series ordinal
2
0 references
author name string
Ruth Hershberg
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
publication date
10 July 2009
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
published in
PLOS Genetics
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
volume
5
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
issue
7
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
page(s)
e1000556
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
copyright license
Creative Commons Attribution 4.0 International
start time
10 July 2009
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Selection on Codon Bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Genomics and evolution of heritable bacterial symbionts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage in twelve species of Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Variation in the strength of selected codon usage bias among bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage between genomes is constrained by genome-wide mutational processes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Global analysis of protein expression in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Evolution of synonymous codon usage in metazoans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Genome sequence of the nematode C. elegans: a platform for investigating biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage in bacteria: correlation with gene expressivity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
The origin of the genetic code
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage and tRNA content in unicellular and multicellular organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
The 'effective number of codons' used in a gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Levels of tRNAs in bacterial cells as affected by amino acid usage in proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
The selection-mutation-drift theory of synonymous codon usage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2700274
retrieved
21 June 2018
Accounting for background nucleotide composition when measuring codon usage bias.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000556
retrieved
21 January 2018
Identifiers
DOI
10.1371/JOURNAL.PGEN.1000556
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
PMCID
2700274
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
PubMed ID
19593368
1 reference
stated in
Europe PubMed Central
PubMed ID
19593368
retrieved
27 July 2017
ResearchGate publication ID
26662271
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