(Q33495747)

27 July 2017

title

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice (English)

1 reference

27 July 2017

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whole genome duplication

1 reference

inferred from title

whole genome sequencing

1 reference

Nils Stein

6

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Andreas Graner

object named as

Andreas Graner

2

0 references

Robbie Waugh

3

object named as

Robbie Waugh

1 reference

27 July 2017

Thomas Thiel

1

1 reference

27 July 2017

Ivo Grosse

4

1 reference

27 July 2017

Timothy J Close

5

1 reference

27 July 2017

language of work or name

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22 August 2009

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27 July 2017

published in

BMC Evolutionary Biology

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27 July 2017

volume

9

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27 July 2017

page(s)

209

1 reference

Circos: an information aesthetic for comparative genomics

27 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The Sorghum bicolor genome and the diversification of grasses

21 June 2018

1 reference

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Structure and expression analysis of rice paleo duplications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Characterization of paralogous protein families in rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Extensive concerted evolution of rice paralogs and the road to regaining independence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 June 2018

1 reference

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Physical and genetic structure of the maize genome reflects its complex evolutionary history

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The TIGR Rice Genome Annotation Resource: improvements and new features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

21 June 2018

1 reference

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Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Diagnosing duplications--can it be done?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

A microcolinearity study at the earliness per se gene Eps-A(m)1 region reveals an ancient duplication that preceded the wheat-rice divergence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The map-based sequence of the rice genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Modeling gene and genome duplications in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Updating the 'crop circle'.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Polyploidy and genome evolution in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The Genomes of Oryza sativa: a history of duplications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Statistical detection of chromosomal homology using shared-gene density alone

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Building genomic profiles for uncovering segmental homology in the twilight zone

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Cereal Genome Evolution: Grasses, line up and form a circle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Duplication and DNA segmental loss in the rice genome: implications for diploidization.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Evidence that rice and other cereals are ancient aneuploids

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746218

New evidence for the synteny of rice chromosome 1 and barley chromosome 3H from rice expressed sequence tags

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19698139

12 December 2020

inferred from PubMed ID database lookup

New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19698139

12 December 2020

inferred from PubMed ID database lookup

Ancestral genome duplication in rice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19698139

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2148-9-209

1 reference

Dimensions Publication ID

27 July 2017

0 references

1 reference

27 July 2017

1 reference